How to use the nanocomp.utils.get_args function in NanoComp

To help you get started, we’ve selected a few NanoComp examples, based on popular ways it is used in public projects.

Secure your code as it's written. Use Snyk Code to scan source code in minutes - no build needed - and fix issues immediately.

wdecoster / nanocomp / nanocomp / NanoComp.py View on Github

def main():
    '''
    Organization function
    -setups logging
    -gets inputdata
    -calls plotting function
    '''
    settings, args = utils.get_args()
    try:
        utils.make_output_dir(args.outdir)
        utils.init_logs(args)
        args.format = utils.check_valid_format(args.format)
        sources = {
            "fastq": args.fastq,
            "bam": args.bam,
            "cram": args.cram,
            "summary": args.summary,
            "fasta": args.fasta,
            "ubam": args.ubam,
        }
        if args.split_runs:
            split_dict = utils.validate_split_runs_file(args.split_runs)
        if args.pickle:
            from nanoget import combine_dfs

How to use the nanocomp.utils.get_args function in NanoComp

To help you get started, we’ve selected a few NanoComp examples, based on popular ways it is used in public projects.

NanoComp

Package Health Score

Popular NanoComp functions

Similar packages