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)
if "percentIdentity" in df:
plots.extend(
compplots.violin_or_box_plot(
df=df[df["percentIdentity"] > np.percentile(df["percentIdentity"], 1)],
y="percentIdentity",
figformat=settings["format"],
path=settings["path"],
y_name="Percent reference identity",
plot=settings["plot"],
title=settings["title"],
palette=settings["colors"])
)
if "start_time" in df:
plots.extend(
compplots.compare_cumulative_yields(
df=df,
path=settings["path"],
title=settings["title"],
palette=settings["colors"])
)
if "channelIDs" in df:
plots.append(
compplots.active_pores_over_time(
df=df,
path=settings["path"],
palette=settings["colors"],
title=settings["title"]
)
)
plots.extend(
compplots.overlay_histogram(