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title=settings["title"],
palette=settings["colors"])
)
plots.extend(
compplots.violin_or_box_plot(
df=df[df["length_filter"]],
y="lengths",
figformat=settings["format"],
path=settings["path"],
y_name="Read length",
plot=settings["plot"],
title=settings["title"],
palette=settings["colors"])
)
plots.extend(
compplots.violin_or_box_plot(
df=df[df["length_filter"]],
y="log length",
figformat=settings["format"],
path=settings["path"],
y_name="Log-transformed read length",
plot=settings["plot"],
log=True,
title=settings["title"],
palette=settings["colors"])
)
if "quals" in df:
plots.extend(
compplots.violin_or_box_plot(
df=df,
y="quals",
figformat=settings["format"],
)
plots.extend(
compplots.violin_or_box_plot(
df=df[df["length_filter"]],
y="log length",
figformat=settings["format"],
path=settings["path"],
y_name="Log-transformed read length",
plot=settings["plot"],
log=True,
title=settings["title"],
palette=settings["colors"])
)
if "quals" in df:
plots.extend(
compplots.violin_or_box_plot(
df=df,
y="quals",
figformat=settings["format"],
path=settings["path"],
y_name="Average base call quality score",
plot=settings["plot"],
title=settings["title"],
palette=settings["colors"])
)
if "duration" in df:
plots.extend(
compplots.compare_sequencing_speed(
df=df,
figformat=settings["format"],
path=settings["path"],
title=settings["title"],
df=df,
figformat=settings["format"],
path=settings["path"],
title=settings["title"],
palette=settings["colors"])
)
plots.extend(
compplots.n50_barplot(
df=df,
figformat=settings["format"],
path=settings["path"],
title=settings["title"],
palette=settings["colors"])
)
plots.extend(
compplots.violin_or_box_plot(
df=df[df["length_filter"]],
y="lengths",
figformat=settings["format"],
path=settings["path"],
y_name="Read length",
plot=settings["plot"],
title=settings["title"],
palette=settings["colors"])
)
plots.extend(
compplots.violin_or_box_plot(
df=df[df["length_filter"]],
y="log length",
figformat=settings["format"],
path=settings["path"],
y_name="Log-transformed read length",