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plot=settings["plot"],
title=settings["title"],
palette=settings["colors"])
)
if "duration" in df:
plots.extend(
compplots.compare_sequencing_speed(
df=df,
figformat=settings["format"],
path=settings["path"],
title=settings["title"],
palette=settings["colors"])
)
if "percentIdentity" in df:
plots.extend(
compplots.violin_or_box_plot(
df=df[df["percentIdentity"] > np.percentile(df["percentIdentity"], 1)],
y="percentIdentity",
figformat=settings["format"],
path=settings["path"],
y_name="Percent reference identity",
plot=settings["plot"],
title=settings["title"],
palette=settings["colors"])
)
if "start_time" in df:
plots.extend(
compplots.compare_cumulative_yields(
df=df,
path=settings["path"],
title=settings["title"],
palette=settings["colors"])
def make_plots(df, settings):
utils.plot_settings(dict(), dpi=settings["dpi"])
df["log length"] = np.log10(df["lengths"])
plots = []
plots.extend(
compplots.output_barplot(
df=df,
figformat=settings["format"],
path=settings["path"],
title=settings["title"],
palette=settings["colors"])
)
plots.extend(
compplots.n50_barplot(
df=df,
figformat=settings["format"],
path=settings["path"],
title=settings["title"],
palette=settings["colors"])
)
plots.extend(
compplots.violin_or_box_plot(