How to use the nanocomp.compplots.compare_sequencing_speed function in NanoComp

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github wdecoster / nanocomp / nanocomp / NanoComp.py View on Github external
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    if "quals" in df:
        plots.extend(
            compplots.violin_or_box_plot(
                df=df,
                y="quals",
                figformat=settings["format"],
                path=settings["path"],
                y_name="Average base call quality score",
                plot=settings["plot"],
                title=settings["title"],
                palette=settings["colors"])
        )
    if "duration" in df:
        plots.extend(
            compplots.compare_sequencing_speed(
                df=df,
                figformat=settings["format"],
                path=settings["path"],
                title=settings["title"],
                palette=settings["colors"])
        )
    if "percentIdentity" in df:
        plots.extend(
            compplots.violin_or_box_plot(
                df=df[df["percentIdentity"] > np.percentile(df["percentIdentity"], 1)],
                y="percentIdentity",
                figformat=settings["format"],
                path=settings["path"],
                y_name="Percent reference identity",
                plot=settings["plot"],
                title=settings["title"],