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How to use the cutadapt.seqio.find_fastq_record_end function in cutadapt

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github marcelm / cutadapt / tests / test_seqio.py View on Github external
def test_fastq_record_end():
	assert find_fastq_record_end(b'') == 0
	assert find_fastq_record_end(b'A\n') == 0
	assert find_fastq_record_end(b'A\nB') == 0
	assert find_fastq_record_end(b'A\nB\n') == 0
	assert find_fastq_record_end(b'A\nB\nC') == 0
	assert find_fastq_record_end(b'A\nB\nC\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\n') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI\n') == 16
github marcelm / cutadapt / tests / test_seqio.py View on Github external
assert find_fastq_record_end(b'A\n') == 0
	assert find_fastq_record_end(b'A\nB') == 0
	assert find_fastq_record_end(b'A\nB\n') == 0
	assert find_fastq_record_end(b'A\nB\nC') == 0
	assert find_fastq_record_end(b'A\nB\nC\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\n') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI\n') == 16
github marcelm / cutadapt / tests / test_seqio.py View on Github external
def test_fastq_record_end():
	assert find_fastq_record_end(b'') == 0
	assert find_fastq_record_end(b'A\n') == 0
	assert find_fastq_record_end(b'A\nB') == 0
	assert find_fastq_record_end(b'A\nB\n') == 0
	assert find_fastq_record_end(b'A\nB\nC') == 0
	assert find_fastq_record_end(b'A\nB\nC\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\n') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI\n') == 16
github marcelm / cutadapt / tests / test_seqio.py View on Github external
def test_fastq_record_end():
	assert find_fastq_record_end(b'') == 0
	assert find_fastq_record_end(b'A\n') == 0
	assert find_fastq_record_end(b'A\nB') == 0
	assert find_fastq_record_end(b'A\nB\n') == 0
	assert find_fastq_record_end(b'A\nB\nC') == 0
	assert find_fastq_record_end(b'A\nB\nC\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\n') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI\n') == 16
github marcelm / cutadapt / tests / test_seqio.py View on Github external
def test_fastq_record_end():
	assert find_fastq_record_end(b'') == 0
	assert find_fastq_record_end(b'A\n') == 0
	assert find_fastq_record_end(b'A\nB') == 0
	assert find_fastq_record_end(b'A\nB\n') == 0
	assert find_fastq_record_end(b'A\nB\nC') == 0
	assert find_fastq_record_end(b'A\nB\nC\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\n') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI') == 16
github marcelm / cutadapt / tests / test_seqio.py View on Github external
def test_fastq_record_end():
	assert find_fastq_record_end(b'') == 0
	assert find_fastq_record_end(b'A\n') == 0
	assert find_fastq_record_end(b'A\nB') == 0
	assert find_fastq_record_end(b'A\nB\n') == 0
	assert find_fastq_record_end(b'A\nB\nC') == 0
	assert find_fastq_record_end(b'A\nB\nC\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\n') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI\n') == 16
github marcelm / cutadapt / tests / test_seqio.py View on Github external
def test_fastq_record_end():
	assert find_fastq_record_end(b'') == 0
	assert find_fastq_record_end(b'A\n') == 0
	assert find_fastq_record_end(b'A\nB') == 0
	assert find_fastq_record_end(b'A\nB\n') == 0
	assert find_fastq_record_end(b'A\nB\nC') == 0
	assert find_fastq_record_end(b'A\nB\nC\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\n') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI\n') == 16
github marcelm / cutadapt / tests / test_seqio.py View on Github external
def test_fastq_record_end():
	assert find_fastq_record_end(b'') == 0
	assert find_fastq_record_end(b'A\n') == 0
	assert find_fastq_record_end(b'A\nB') == 0
	assert find_fastq_record_end(b'A\nB\n') == 0
	assert find_fastq_record_end(b'A\nB\nC') == 0
	assert find_fastq_record_end(b'A\nB\nC\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\n') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI\n') == 16
github marcelm / cutadapt / tests / test_seqio.py View on Github external
assert find_fastq_record_end(b'A\nB') == 0
	assert find_fastq_record_end(b'A\nB\n') == 0
	assert find_fastq_record_end(b'A\nB\nC') == 0
	assert find_fastq_record_end(b'A\nB\nC\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\n') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI\n') == 16
github marcelm / cutadapt / tests / test_seqio.py View on Github external
assert find_fastq_record_end(b'') == 0
	assert find_fastq_record_end(b'A\n') == 0
	assert find_fastq_record_end(b'A\nB') == 0
	assert find_fastq_record_end(b'A\nB\n') == 0
	assert find_fastq_record_end(b'A\nB\nC') == 0
	assert find_fastq_record_end(b'A\nB\nC\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\n') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI\n') == 16

cutadapt

Adapter trimming and other preprocessing of high-throughput sequencing reads

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MIT
Latest version published 5 months ago

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