How to use the tables.BoolCol function in tables

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github HiSPARC / sapphire / scripts / sciencepark / master.py View on Github external
def _create_reconstruction_group_and_tables(self, results_group, overwrite):
        if results_group in self.data:
            if overwrite:
                self.data.remove_node(results_group, recursive=True)
            else:
                raise RuntimeError("Result group exists, but overwrite is False")

        head, tail = os.path.split(results_group)
        group = self.data.create_group(head, tail)
        stations_description = {'s%d' % u: tables.BoolCol() for u in
                                self.stations}

        description = self.reconstruction_description
        description.update(stations_description)
        self.reconstruction = self.data.create_table(group,
            'reconstructions', description)

        description = self.reconstruction_coincidence_description
        description.update(stations_description)
        self.reconstruction_coincidences = \
            self.data.create_table(group, 'coincidences', description)

        return group
github saroele / awesim / awesim / simdex.py View on Github external
def add_meta(simulation, key):
            """Create a node for the simulation and add data to /Metadata"""
            
         
            
            class Meta(tbl.IsDescription):
                SID = tbl.StringCol(itemsize=16)
                path = tbl.StringCol(itemsize=160)
                log_analysed = tbl.BoolCol()
                successful = tbl.BoolCol()
                algorithm = tbl.StringCol(itemsize=16)
                cpu_time = tbl.Float32Col()
                successful_steps = tbl.Int32Col()
                steps_nok = tbl.Int32Col()
                timed_out = tbl.BoolCol()
                perc_wrong = tbl.Float32Col()
                time_events_model = tbl.Int32Col()
                time_events_U = tbl.Int32Col()
                state_events = tbl.Int32Col()
                step_events = tbl.Int32Col()
                step_size_min = tbl.Float32Col()
                step_size_max = tbl.Float32Col()
                int_order_max = tbl.Int32Col()
github bx / bootloader_instrumentation_suite / fiddle / substage.py View on Github external
"loading", "patching"])
region_types = tables.Enum(["future", 'global', 'patching',
                            'stack',
                            'symbol',
                            'readonly',
                            BOOKKEEPING])
vlist = ['rw', 'r', 'w', 'none', '?']
perms = tables.Enum(vlist + ["rwx", "x", "rx"])


class MemoryRegionInfo(tables.IsDescription):
    short_name = tables.StringCol(255)
    parent_name = tables.StringCol(255)
    name = tables.StringCol(255)
    comments = tables.StringCol(512)
    include_children = tables.BoolCol()
    reclassifiable = tables.BoolCol()
    do_print = tables.BoolCol()


class MemoryRegionAddrs(tables.IsDescription):
    short_name = tables.StringCol(255)
    startaddr = tables.UInt64Col()
    startaddrlo = tables.UInt32Col()
    startaddrhi = tables.UInt32Col()
    endaddr = tables.UInt64Col()
    endaddrlo = tables.UInt32Col()
    endaddrhi = tables.UInt32Col()


class SubstageRelocInfo(tables.IsDescription):
    substagenum = tables.UInt8Col()
github bx / bootloader_instrumentation_suite / fiddle / staticanalysis.py View on Github external
else:
            return "" % (self.start_ins_addr, self.write_ins_addr, self.finish_ins_addr)


class WriteEntry(tables.IsDescription):
    pc = tables.UInt64Col()
    pclo = tables.UInt32Col()
    pchi = tables.UInt32Col()
    thumb = tables.BoolCol()
    reg0 = tables.StringCol(4)
    reg1 = tables.StringCol(4)
    reg2 = tables.StringCol(4)
    reg3 = tables.StringCol(4)
    reg4 = tables.StringCol(4)
    writesize = tables.Int64Col()
    halt = tables.BoolCol()  # whether to insert a breakpoint here


class SrcEntry(tables.IsDescription):
    addr = tables.UInt64Col()
    addrlo = tables.UInt32Col()
    addrhi = tables.UInt32Col()
    line = tables.StringCol(512)  # file/lineno
    src = tables.StringCol(512)  # contents of source code at this location
    ivalue = tables.StringCol(12)
    ilength = tables.UInt8Col()
    thumb = tables.BoolCol()
    mne = tables.StringCol(10)
    disasm = tables.StringCol(256)


class RelocInfo(tables.IsDescription):
github bx / bootloader_instrumentation_suite / fiddle / substage.py View on Github external
reloc_name = tables.StringCol(128)


class SubstageRegionPolicy(tables.IsDescription):
    default_perms = tables.EnumCol(perms,
                                   'rwx', base='uint8')
    short_name = tables.StringCol(255)
    symbol_name = tables.StringCol(255)  # symbol name in code
    symbol_elf_name = tables.StringCol(255)  # symbol name in elf filie
    region_type = tables.EnumCol(region_types, BOOKKEEPING, base='uint8')
    substagenum = tables.UInt8Col()
    new = tables.BoolCol()
    defined = tables.BoolCol()
    undefined = tables.BoolCol()
    writable = tables.BoolCol()
    reclassified = tables.BoolCol()
    allowed_symbol = tables.BoolCol()
    do_print = tables.BoolCol()


class SubstageContents(tables.IsDescription):
    substagenum = tables.UInt8Col(pos=1)
    functionname = tables.StringCol(255, pos=2)


class SubstageEntry(tables.IsDescription):
    substagenum = tables.UInt8Col(pos=1)
    functionname = tables.StringCol(255)
    name = tables.StringCol(255)
    stack = tables.StringCol(255)
    comments = tables.StringCol(255)
    substage_type = tables.EnumCol(substage_types,
github HiSPARC / sapphire / sapphire / simulations / base.py View on Github external
def _prepare_coincidence_tables(self):
        """Create coincidence tables

        These are the same as the tables created by
        :class:`sapphire.analysis.coincidences.CoincidencesESD`.
        This makes it easy to link events detected by multiple stations.

        """
        self.coincidence_group = self.datafile.createGroup(self.output_path,
                                                           'coincidences',
                                                           createparents=True)
        self.coincidence_group._v_attrs.cluster = self.cluster

        description = storage.Coincidence
        station_columns = {'s%d' % station.station_number: tables.BoolCol()
                           for station in self.cluster.stations}
        description.columns.update(station_columns)

        self.coincidences = self.datafile.createTable(
                self.coincidence_group, 'coincidences', description)

        self.c_index = self.datafile.createVLArray(
                self.coincidence_group, 'c_index', tables.UInt32Col(shape=2))

        self.s_index = self.datafile.createVLArray(
                self.coincidence_group, 's_index', tables.VLStringAtom())
github HiSPARC / sapphire / sapphire / esd.py View on Github external
def _create_coincidences_tables(file, group, station_groups):
    """Setup coincidence tables

    :return: the created coincidences group.

    """
    coin_group = group + '/coincidences'

    # Create coincidences table
    description = storage.Coincidence
    s_columns = {'s%d' % station: tables.BoolCol(pos=p)
                 for p, station in enumerate(station_groups, 12)}
    description.columns.update(s_columns)
    coincidences = file.create_table(coin_group, 'coincidences', description, createparents=True)

    # Create c_index
    file.create_vlarray(coin_group, 'c_index', tables.UInt32Col(shape=2))

    # Create and fill s_index
    s_index = file.create_vlarray(coin_group, 's_index', tables.VLStringAtom())
    for station_group in itervalues(station_groups):
        s_index.append(station_group['group'].encode('utf-8'))

    return coincidences._v_parent
github HiSPARC / sapphire / sapphire / analysis / reconstructions.py View on Github external
def prepare_output(self):
        """Prepare output table"""

        dest_path = os.path.join(self.dest_group, self.destination)

        if dest_path in self.dest_data:
            if self.overwrite:
                self.dest_data.remove_node(dest_path, recursive=True)
            else:
                raise RuntimeError("Reconstructions table already exists for "
                                   "%s, and overwrite is False" %
                                   self.dest_group)

        s_columns = {'s%d' % station.number: tables.BoolCol(pos=p)
                     for p, station in enumerate(self.cluster.stations, 26)}
        description = ReconstructedCoincidence
        description.columns.update(s_columns)
        self.reconstructions = self.dest_data.create_table(
            self.dest_group, self.destination, description,
            expectedrows=self.coincidences.nrows, createparents=True)
        try:
            self.reconstructions._v_attrs.cluster = self.cluster
        except tables.HDF5ExtError:
            warnings.warn('Unable to store cluster object, to large for HDF.')
github saroele / awesim / awesim / simdex.py View on Github external
def add_meta(simulation, key):
            """Create a node for the simulation and add data to /Metadata"""
            
         
            
            class Meta(tbl.IsDescription):
                SID = tbl.StringCol(itemsize=16)
                path = tbl.StringCol(itemsize=160)
                log_analysed = tbl.BoolCol()
                successful = tbl.BoolCol()
                algorithm = tbl.StringCol(itemsize=16)
                cpu_time = tbl.Float32Col()
                successful_steps = tbl.Int32Col()
                steps_nok = tbl.Int32Col()
                timed_out = tbl.BoolCol()
                perc_wrong = tbl.Float32Col()
                time_events_model = tbl.Int32Col()
                time_events_U = tbl.Int32Col()
                state_events = tbl.Int32Col()
                step_events = tbl.Int32Col()
                step_size_min = tbl.Float32Col()
                step_size_max = tbl.Float32Col()
                int_order_max = tbl.Int32Col()