How to use the meshio.xdmf function in meshio

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github nschloe / meshio / test / performance.py View on Github external
            lambda f, m: meshio.xdmf.write(f, m, data_format="XML"),
            meshio.xdmf.read,
github nschloe / meshio / test / performance.py View on Github external
            lambda f, m: meshio.xdmf.write(f, m, data_format="HDF", compression=None),
            meshio.xdmf.read,
github nschloe / meshio / test / size.py View on Github external
        lambda f, m: meshio.xdmf.write(f, m, data_format="XML"),
        ["out.xdmf"],
github nschloe / meshio / test / size.py View on Github external
        lambda f, m: meshio.xdmf.write(f, m, data_format="HDF", compression="gzip"),
        ["out.xdmf", "out.h5"],
github nschloe / meshio / test / test_xdmf.py View on Github external
times = numpy.linspace(0.0, 1.0, 5)
        point_data = [
            {
                "phi": numpy.full(n, t),
                "u": numpy.full(helpers.tri_mesh_2d.points.shape, t),
            }
            for t in times
        ]
        for t, pd in zip(times, point_data):
            writer.write_data(
                t, point_data=pd, cell_data={"a": {"triangle": [3.0, 4.2]}}
            )

    # read it back in
    with meshio.xdmf.TimeSeriesReader(filename) as reader:
        points, cells = reader.read_points_cells()
        for k in range(reader.num_steps):
            t, pd, cd = reader.read_data(k)
            assert numpy.abs(times[k] - t) < 1.0e-12
            for key, value in pd.items():
                assert numpy.all(numpy.abs(value - point_data[k][key]) < 1.0e-12)
github nschloe / meshio / test / test_xdmf.py View on Github external
def test_xdmf3(mesh, data_format):
    def write(*args, **kwargs):
        return meshio.xdmf.write(*args, data_format=data_format, **kwargs)

    helpers.write_read(write, meshio.xdmf.read, mesh, 1.0e-14)
github nschloe / meshio / test / test_xdmf.py View on Github external
def test_time_series():
    # write the data
    filename = "out.xdmf"

    with meshio.xdmf.TimeSeriesWriter(filename) as writer:
        writer.write_points_cells(helpers.tri_mesh_2d.points, helpers.tri_mesh_2d.cells)
        n = helpers.tri_mesh_2d.points.shape[0]

        times = numpy.linspace(0.0, 1.0, 5)
        point_data = [
            {
                "phi": numpy.full(n, t),
                "u": numpy.full(helpers.tri_mesh_2d.points.shape, t),
            }
            for t in times
        ]
        for t, pd in zip(times, point_data):
            writer.write_data(
                t, point_data=pd, cell_data={"a": {"triangle": [3.0, 4.2]}}
            )
github nschloe / meshio / test / performance.py View on Github external
meshio.vtu.read,
            ["out.vtu"],
        ),
        "VTU (ASCII)": (
            lambda f, m: meshio.vtu.write(f, m, binary=False),
            meshio.vtu.read,
            ["out.vtu"],
        ),
        "XDMF (binary)": (
            lambda f, m: meshio.xdmf.write(f, m, data_format="Binary"),
            meshio.xdmf.read,
            ["out.xdmf", "out0.bin", "out1.bin"],
        ),
        "XDMF (HDF, GZIP)": (
            lambda f, m: meshio.xdmf.write(f, m, data_format="HDF", compression="gzip"),
            meshio.xdmf.read,
            ["out.xdmf", "out.h5"],
        ),
        "XDMF (HDF, uncompressed)": (
            lambda f, m: meshio.xdmf.write(f, m, data_format="HDF", compression=None),
            meshio.xdmf.read,
            ["out.xdmf", "out.h5"],
        ),
        "XDMF (XML)": (
            lambda f, m: meshio.xdmf.write(f, m, data_format="XML"),
            meshio.xdmf.read,
            ["out.xdmf"],
        ),
    }

    # formats = {
    #     # "VTK (ASCII)": formats["VTK (ASCII)"],
github nschloe / meshio / meshio / _cli / _binary.py View on Github external
elif fmt == "flac3d":
        flac3d.write(args.infile, mesh, binary=True)
    elif fmt == "gmsh":
        gmsh.write(args.infile, mesh, binary=True)
    elif fmt == "mdpa":
        mdpa.write(args.infile, mesh, binary=True)
    elif fmt == "ply":
        ply.write(args.infile, mesh, binary=True)
    elif fmt == "stl":
        stl.write(args.infile, mesh, binary=True)
    elif fmt == "vtk":
        vtk.write(args.infile, mesh, binary=True)
    elif fmt == "vtu":
        vtu.write(args.infile, mesh, binary=True)
    elif fmt == "xdmf":
        xdmf.write(args.infile, mesh, data_format="HDF")
    else:
        print("Don't know how to convert {} to binary format.".format(args.infile))
        exit(1)

    size = os.stat(args.infile).st_size
    print("File size after:  {:.2f} MB".format(size / 1024 ** 2))
github nschloe / meshio / meshio / _cli / _decompress.py View on Github external
mesh = read(args.infile, file_format=args.input_format)

    # # Some converters (like VTK) require `points` to be contiguous.
    # mesh.points = numpy.ascontiguousarray(mesh.points)

    # write it out
    if fmt == "cgns":
        cgns.write(args.infile, mesh, compression=None)
    elif fmt == "h5m":
        h5m.write(args.infile, mesh, compression=None)
    elif fmt == "med":
        med.write(args.infile, mesh, compression=None)
    elif fmt == "vtu":
        vtu.write(args.infile, mesh, binary=True, compression=None)
    elif fmt == "xdmf":
        xdmf.write(args.infile, mesh, data_format="HDF", compression=None)
    else:
        print("Don't know how to decompress {}.".format(args.infile))
        exit(1)

    size = os.stat(args.infile).st_size
    print("File size after:  {:.2f} MB".format(size / 1024 ** 2))