How to use the meshio._mesh.Mesh function in meshio

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github nschloe / meshio / meshio / tetgen / _tetgen.py View on Github external
while len(line) == 0 or line[0] == "#":
            line = f.readline().strip()

        num_tets, num_points_per_tet, num_attrs = [
            int(item) for item in line.strip().split(" ") if item != ""
        ]
        if num_points_per_tet != 4:
            raise ReadError()
        cells = numpy.fromfile(
            f, dtype=int, count=(5 + num_attrs) * num_tets, sep=" "
        ).reshape(num_tets, 5 + num_attrs)
        # remove the leading index column and the attributes
        cells = cells[:, 1:5]
        cells -= node_index_base

    return Mesh(points, [CellBlock("tetra", cells)])
github nschloe / meshio / meshio / vtk / _vtk.py View on Github external
line = line.strip()
        if len(line) == 0:
            continue

        info.split = line.split()
        info.section = info.split[0].upper()

        if info.section in vtk_sections:
            _read_section(f, info)
        else:
            _read_subsection(f, info)

    _check_mesh(info)
    cells, cell_data = translate_cells(info.c, info.ct, info.cell_data_raw)

    return Mesh(
        info.points,
        cells,
        point_data=info.point_data,
        cell_data=cell_data,
        field_data=info.field_data,
    )
github nschloe / meshio / meshio / stl / _stl.py View on Github external
# int16 (attribute count)
    out = numpy.fromfile(
        f,
        count=num_triangles,
        dtype=numpy.dtype(
            [("normal", "f4", (3,)), ("facet", "f4", (3, 3)), ("attr count", "i2")]
        ),
    )
    # discard normals, attribute count
    facets = out["facet"]
    # if not numpy.all(out["attr count"] == 0):
    #     print(out["attr count"])
    #     raise ReadError("Nonzero attr count")

    points, cells = data_from_facets(facets)
    return Mesh(points, cells)
github nschloe / meshio / meshio / abaqus / _abaqus.py View on Github external
# Parse cell sets defined in ELEMENT
    for i, name in enumerate(cell_sets_element_order):
        # Not sure whether this case would ever happen
        if name in cell_sets.keys():
            cell_sets[name][i] = cell_sets_element[name]
        else:
            cell_sets[name] = []
            for ic in range(len(cells)):
                cell_sets[name].append(
                    cell_sets_element[name]
                    if i == ic
                    else numpy.array([], dtype="int32")
                )

    return Mesh(
        points,
        cells,
        point_data=point_data,
        cell_data=cell_data,
        field_data=field_data,
        point_sets=point_sets,
        cell_sets=cell_sets,
    )
github nschloe / meshio / meshio / dolfin / _dolfin.py View on Github external
def read(filename):
    points, cells, cell_type = _read_mesh(filename)
    cell_data = _read_cell_data(filename, cell_type)
    return Mesh(points, cells, cell_data=cell_data)
github nschloe / meshio / meshio / permas / _permas.py View on Github external
name = params_map["NSET"]
            if name not in nsets:
                nsets[name] = []
            nsets[name].append(setids)
        elif keyword.startswith("ESET"):
            params_map = get_param_map(keyword, required_keys=["ESET"])
            setids = read_set(f, params_map)
            name = params_map["ESET"]
            if name not in elsets:
                elsets[name] = []
            elsets[name].append(setids)
        else:
            # There are just too many PERMAS keywords to explicitly skip them.
            pass

    return Mesh(
        points, cells, point_data=point_data, cell_data=cell_data, field_data=field_data
    )
github nschloe / meshio / meshio / _helpers.py View on Github external
def write_points_cells(
    filename,
    points,
    cells,
    point_data=None,
    cell_data=None,
    field_data=None,
    file_format=None,
    **kwargs
):
    mesh = Mesh(
        points, cells, point_data=point_data, cell_data=cell_data, field_data=field_data
    )
    return write(filename, mesh, file_format=file_format, **kwargs)
github nschloe / meshio / meshio / _helpers.py View on Github external
def write_points_cells(
    filename,
    points,
    cells,
    point_data=None,
    cell_data=None,
    field_data=None,
    point_sets=None,
    cell_sets=None,
    file_format=None,
    **kwargs,
):
    points = numpy.asarray(points)
    cells = [(key, numpy.asarray(value)) for key, value in cells]
    mesh = Mesh(
        points,
        cells,
        point_data=point_data,
        cell_data=cell_data,
        field_data=field_data,
        point_sets=point_sets,
        cell_sets=cell_sets,
    )
    return write(filename, mesh, file_format=file_format, **kwargs)