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logger.info('Balance before matching:\n{}'.format(create_table_one(data=df,
treatment_col=args.treatment_col,
features=MATCHING_COVARIATES)))
logger.info('Matching based on the propensity score with the nearest neighbor model')
psm = NearestNeighborMatch(replace=args.replace,
ratio=args.ratio,
random_state=42)
matched = psm.match_by_group(data=df,
treatment_col=args.treatment_col,
score_cols=[SCORE_COL],
groupby_col=args.groupby_col)
logger.info('shape: {}\n{}'.format(matched.shape, matched.head()))
logger.info('Balance after matching:\n{}'.format(create_table_one(data=matched,
treatment_col=args.treatment_col,
features=MATCHING_COVARIATES)))
matched.to_csv(args.output_file, index=False)
logger.info('Matched data saved as {}'.format(args.output_file))
df = pd.read_csv(args.input_file)
df[args.treatment_col] = df[args.treatment_col].astype(int)
logger.info('shape: {}\n{}'.format(df.shape, df.head()))
pm = ElasticNetPropensityModel(random_state=42)
w = df[args.treatment_col].values
X = load_data(data=df,
features=args.feature_cols,
transformations=PROPENSITY_FEATURE_TRANSFORMATIONS)
logger.info('Scoring with a propensity model: {}'.format(pm))
df[SCORE_COL] = pm.fit_predict(X, w)
logger.info('Balance before matching:\n{}'.format(create_table_one(data=df,
treatment_col=args.treatment_col,
features=MATCHING_COVARIATES)))
logger.info('Matching based on the propensity score with the nearest neighbor model')
psm = NearestNeighborMatch(replace=args.replace,
ratio=args.ratio,
random_state=42)
matched = psm.match_by_group(data=df,
treatment_col=args.treatment_col,
score_cols=[SCORE_COL],
groupby_col=args.groupby_col)
logger.info('shape: {}\n{}'.format(matched.shape, matched.head()))
logger.info('Balance after matching:\n{}'.format(create_table_one(data=matched,
treatment_col=args.treatment_col,
features=MATCHING_COVARIATES)))
matched.to_csv(args.output_file, index=False)
logger.info('Matched data saved as {}'.format(args.output_file))