How to use the vedo.analysis.recoSurface function in vedo

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github BrancoLab / BrainRender / brainrender / atlases / celegans.py View on Github external
atlas=Celegans,
            add_root=False,
            display_inset=False,
            atlas_kwargs=dict(data_folder=self.data_folder),
        )

        temp_scene.add_neurons(self.neurons_names)
        temp_scene.render(interactive=False)
        temp_scene.close()

        root = merge(*temp_scene.actors["neurons"]).clean().cap()
        # root = mesh2Volume(root, spacing=(0.02, 0.02, 0.02)).isosurface()

        points = Points(root.points()).smoothMLS2D(f=0.8).clean(tol=0.005)

        root = recoSurface(points, dims=100, radius=0.2)

        # Save
        write(root, rootpath)

        del temp_scene
        return root

vedo

A python module for scientific analysis and visualization of 3D objects and point clouds based on VTK and Numpy.

MIT
Latest version published 6 months ago

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