How to use the pyfaidx.__init__.IndexNotFoundError function in pyfaidx
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mdshw5 / pyfaidx / pyfaidx / __init__.py View on Github 
elif self.duplicate_action == "longest":
if len(rec) > len(self.index[key]):
self.index[key] = rec
elif self.duplicate_action == "shortest":
if len(rec) < len(self.index[key]):
self.index[key] = rec
elif self.duplicate_action == "drop":
if key not in drop_keys:
drop_keys.append(key)
else:
self.index[key] = rec
prev_bend = bend
for dup in drop_keys:
self.index.pop(dup, None)
except IOError:
raise IndexNotFoundError(
"Could not read index file %s" % self.indexname)pyfaidx
pyfaidx: efficient pythonic random access to fasta subsequences
Package Health Score
72 / 100Popular pyfaidx functions
- pyfaidx.__init__.FastaIndexingError
- pyfaidx.__init__.FastaVariant
- pyfaidx.__init__.FetchError
- pyfaidx.__init__.IndexNotFoundError
- pyfaidx.__init__.Sequence
- pyfaidx.__init__.UnsupportedCompressionFormat
- pyfaidx.bed_split
- pyfaidx.cli.Counter
- pyfaidx.cli.main
- pyfaidx.complement
- pyfaidx.Faidx
- pyfaidx.Fasta
- pyfaidx.fasta
- pyfaidx.FastaIndexingError
- pyfaidx.FastaVariant
- pyfaidx.FetchError
- pyfaidx.Sequence
- pyfaidx.ucsc_split
- pyfaidx.UnsupportedCompressionFormat
- pyfaidx.wrap_sequence