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def test_histogram(post):
axes = mp.histogram(post)
# Extract filename from savefile or default to sampler:
fname = sampler if savefile is None else os.path.splitext(savefile)[0]
# Include bestp in posterior plots:
best_freepars = output['bestp'][ifree] if showbp else None
# Trace plot:
mp.trace(output['posterior'], zchain=output['zchain'],
burnin=output['burnin'], pnames=texnames[ifree],
savefile=fname+"_trace.png")
log.msg("'{:s}'".format(fname+"_trace.png"), indent=2)
# Pairwise posteriors:
mp.pairwise(posterior, pnames=texnames[ifree], bestp=best_freepars,
savefile=fname+"_pairwise.png")
log.msg("'{:s}'".format(fname+"_pairwise.png"), indent=2)
# Histograms:
mp.histogram(posterior, pnames=texnames[ifree], bestp=best_freepars,
savefile=fname+"_posterior.png",
quantile=0.683, pdf=pdf, xpdf=xpdf)
log.msg("'{:s}'".format(fname+"_posterior.png"), indent=2)
# RMS vs bin size:
if rms:
RMS, RMSlo, RMShi, stderr, bs = ms.time_avg(output['best_model']-data)
mp.rms(bs, RMS, stderr, RMSlo, RMShi, binstep=len(bs)//500+1,
savefile=fname+"_RMS.png")
log.msg("'{:s}'".format(fname+"_RMS.png"), indent=2)
# Sort of guessing that indparams[0] is the X array for data as in y=y(x):
if (indparams != []
and isinstance(indparams[0], (list, tuple, np.ndarray))
and np.size(indparams[0]) == ndata):
try:
mp.modelfit(data, uncert, indparams[0], output['best_model'],
savefile=fname+"_model.png")