How to use the mayavi.mlab.pipeline.surface function in mayavi

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github enthought / mayavi / examples / mayavi / mlab / canyon_decimation.py View on Github external
# Use a greedy_terrain_decimation to created a decimated mesh
terrain = mlab.pipeline.greedy_terrain_decimation(data)
terrain.filter.error_measure = 'number_of_triangles'
terrain.filter.number_of_triangles = 5000
terrain.filter.compute_normals = True

# Plot it black the lines of the mesh
lines = mlab.pipeline.surface(terrain, color=(0, 0, 0),
                                      representation='wireframe')
# The terrain decimator has done the warping. We control the warping
# scale via the actor's scale.
lines.actor.actor.scale = [1, 1, 0.2]

# Display the surface itself.
surf = mlab.pipeline.surface(terrain, colormap='gist_earth',
                                      vmin=1450, vmax=1650)
surf.actor.actor.scale = [1, 1, 0.2]

# Display the original regular grid. This time we have to use a
# warp_scalar filter.
warp = mlab.pipeline.warp_scalar(data, warp_scale=0.2)
grid = mlab.pipeline.surface(warp, color=(1, 1, 1),
                                      representation='wireframe')

mlab.view(-17, 46, 143, [1.46, 8.46, 269.4])

mlab.show()
github pints-team / pints / free / myokit / myokit / lib / fit.py View on Github external
the ``Mayavi`` package and Delaunay triangulation.
    
    This method is useful to visualize the output of an optimisation routine on
    a 2-dimensional parameter space.
    
    *Note: this method requires Mayavi to be installed.*
    """
    # Import mayavi
    from mayavi import mlab
    # Create a figure
    mlab.figure(1, fgcolor=(0, 0, 0), bgcolor=(1, 1, 1))
    # Visualize the points
    p = mlab.points3d(x, y, f, f, scale_mode='none', scale_factor=0)
    # Create and visualize the mesh
    mesh = mlab.pipeline.delaunay2d(p)
    surf = mlab.pipeline.surface(mesh)
    # Display the created surface
    mlab.show()
def map_grid(f, bounds, n, parallel=False, args=None):
github enthought / mayavi / examples / mayavi / mlab / flight_graph.py View on Github external
###############################################################################
# Display city names
for city, index in cities.items():
    label = mlab.text(x[index], y[index], city, z=z[index],
                      width=0.016 * len(city), name=city)
    label.property.shadow = True

###############################################################################
# Display continents outline, using the VTK Builtin surface 'Earth'
from mayavi.sources.builtin_surface import BuiltinSurface
continents_src = BuiltinSurface(source='earth', name='Continents')
# The on_ratio of the Earth source controls the level of detail of the
# continents outline.
continents_src.data_source.on_ratio = 2
continents = mlab.pipeline.surface(continents_src, color=(0, 0, 0))

###############################################################################
# Display a semi-transparent sphere, for the surface of the Earth

# We use a sphere Glyph, throught the points3d mlab function, rather than
# building the mesh ourselves, because it gives a better transparent
# rendering.
sphere = mlab.points3d(0, 0, 0, scale_mode='none',
                                scale_factor=2,
                                color=(0.67, 0.77, 0.93),
                                resolution=50,
                                opacity=0.7,
                                name='Earth')

# These parameters, as well as the color, where tweaked through the GUI,
# with the record mode to produce lines of code usable in a script.
github romeric / florence / Florence / MaterialLibrary / MaterialBase.py View on Github external
interpolation_degree=0)
                elif mesh.element_type == "hex":
                    tmesh = PostProcess.TessellateHexes(mesh,np.zeros_like(mesh.points),
                        interpolation_degree=0)

                figure = mlab.figure(bgcolor=(1,1,1),fgcolor=(1,1,1),size=(1000,800))

                mlab.quiver3d(Xs, Ys, Zs, self.anisotropic_orientations[:,0],
                    self.anisotropic_orientations[:,1], self.anisotropic_orientations[:,2],
                    color=(0.,128./255,128./255),line_width=2)

                src = mlab.pipeline.scalar_scatter(tmesh.x_edges.T.copy().flatten(),
                tmesh.y_edges.T.copy().flatten(), tmesh.z_edges.T.copy().flatten())
                src.mlab_source.dataset.lines = tmesh.connections
                lines = mlab.pipeline.stripper(src)
                h_edges = mlab.pipeline.surface(lines, color = (0,0,0), line_width=2)

                mlab.show()
github enthought / mayavi / examples / mayavi / advanced_visualization / probe_filter.py View on Github external
field = mlab.pipeline.scalar_field(x, y, z, Phi)
ipw = mlab.pipeline.image_plane_widget(field)
mlab.outline(field)

surface = mlab.pipeline.builtin_surface()
surface.source = 'sphere'
surface.data_source.radius = .4
surface.data_source.phi_resolution = 200
surface.data_source.theta_resolution = 200
probe_filter = tvtk.ProbeFilter()
configure_input(probe_filter, surface.data_source)
configure_source_data(probe_filter, field.outputs[0])
probe = mlab.pipeline.user_defined(surface, filter=probe_filter)

surf = mlab.pipeline.surface(probe)

fig = mlab.gcf()

################################################################################
# Finally, to inspect the VTK Pipeline (and not the Mayavi one, we
# use the TVTK pipeline browser)
# Note that for Mayavi version < 3.4.1, there is a bug in the
# PipelineBrowser preventing a good display of this pipeline.
from tvtk.pipeline.browser import PipelineBrowser
browser = PipelineBrowser(fig.scene)
browser.show()

mlab.show()
github enthought / mayavi / mayavi / tools / data_wizards / data_source_factory.py View on Github external
def view(src):
    """ Open up a mayavi scene and display the dataset in it.
    """
    from mayavi import mlab
    mayavi = mlab.get_engine()
    fig = mlab.figure(bgcolor=(1, 1, 1), fgcolor=(0, 0, 0),)
    mayavi.add_source(src)

    mlab.pipeline.surface(src, opacity=0.1)
    mlab.pipeline.surface(mlab.pipeline.extract_edges(src),
                            color=(0, 0, 0), )
github enthought / mayavi / examples / mayavi / mlab / lucy.py View on Github external
# Extract the data
import tarfile
lucy_tar_file = tarfile.open('lucy.tar.gz')
try:
    os.mkdir('lucy_data')
except:
    pass
lucy_tar_file.extractall('lucy_data')
lucy_tar_file.close()

# Path to the lucy ply file
lucy_ply_file = join('lucy_data', 'lucy.ply')

# Render the lucy ply file
mlab.pipeline.surface(mlab.pipeline.open(lucy_ply_file))
mlab.show()

import shutil
shutil.rmtree('lucy_data')
github nipy / PySurfer / surfer / viz.py View on Github external
pos_thresh = threshold_filter(mesh, low=old.pos_lims[0])
                pos = mlab.pipeline.surface(
                    pos_thresh, colormap="YlOrRd", figure=self._f,
                    vmin=old.pos_lims[1], vmax=old.pos_lims[2])
                pos_bar = mlab.scalarbar(pos, nb_labels=5)
            pos_bar.reverse_lut = True
            pos_bar.scalar_bar_representation.position = (0.53, 0.01)
            pos_bar.scalar_bar_representation.position2 = (0.42, 0.09)
            self._format_cbar_text(pos_bar)
        else:
            pos = pos_bar = None

        if old.neg_lims is not None:
            with warnings.catch_warnings(record=True):
                neg_thresh = threshold_filter(mesh, up=old.neg_lims[0])
                neg = mlab.pipeline.surface(
                    neg_thresh, colormap="PuBu", figure=self._f,
                    vmin=old.neg_lims[1], vmax=old.neg_lims[2])
                neg_bar = mlab.scalarbar(neg, nb_labels=5)
            neg_bar.scalar_bar_representation.position = (0.05, 0.01)
            neg_bar.scalar_bar_representation.position2 = (0.42, 0.09)
            self._format_cbar_text(neg_bar)
        else:
            neg = neg_bar = None

        return OverlayDisplay(self, array_id, pos, pos_bar, neg, neg_bar)
github networkx / networkx / examples / 3d_drawing / mayavi2_spring.py View on Github external
scalars = np.array(list(G.nodes())) + 5

pts = mlab.points3d(
    xyz[:, 0],
    xyz[:, 1],
    xyz[:, 2],
    scalars,
    scale_factor=0.1,
    scale_mode="none",
    colormap="Blues",
    resolution=20,
)

pts.mlab_source.dataset.lines = np.array(list(G.edges()))
tube = mlab.pipeline.tube(pts, tube_radius=0.01)
mlab.pipeline.surface(tube, color=(0.8, 0.8, 0.8))
mlab.show()