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output_images(comparison.array, fname,
args.format, args.scale, args.ncol))
imgs.extend(
output_images(comparison.delta, dname,
args.format, args.scale, args.ncol))
else:
print("Reconstructing with {}...".format(args.algorithm))
imgs = run(args.phantom, args.algorithm, args)
# timing report to stdout
print('{}\n'.format(manager))
timemory.options.output_dir = "{}/{}/{}".format(
args.output_dir, args.phantom, algorithm)
timemory.options.set_report("run_tomopy.out")
timemory.options.set_serial("run_tomopy.json")
manager.report()
# provide timing plots
try:
timemory.plotting.plot(files=[timemory.options.serial_filename],
echo_dart=True,
output_dir=timemory.options.output_dir)
except Exception as e:
print("Exception - {}".format(e))
# provide results to dashboard
try:
for i in range(0, len(imgs)):
img_base = "{}_{}_stack_{}".format(args.phantom, algorithm, i)
img_name = os.path.basename(imgs[i]).replace(
".{}".format(args.format), "").replace(
def output_analysis(manager, args, imgs):
# timing report to stdout
print('{}\n'.format(manager))
fpath = args.output_dir
timemory.options.output_dir = fpath
timemory.options.set_report("run_tomopy.out")
timemory.options.set_serial("run_tomopy.json")
manager.report()
# provide timing plots
try:
print("\nPlotting TiMemory results...\n")
timemory.plotting.plot(files=[timemory.options.serial_filename],
echo_dart=True,
output_dir=timemory.options.output_dir)
except Exception as e:
print("Exception [timemory.plotting] - {}".format(e))
# provide results to dashboard
try:
print("\nEchoing dart tags...\n")
for i in range(0, len(imgs)):
img_type = args.format
img_name = os.path.basename(imgs[i]).replace(
".{}".format(args.format), "")