Package Health Score

61 / 100

security
No known security issues
popularity
Limited
maintenance
Inactive
community
Active

Popularity

Limited

GitHub Stars: 479
Forks: 79
Contributors: 50

Direct Usage Popularity

Based on project statistics from the GitHub repository for the PyPI package sourmash-plugin-abundhist, we found that it has been starred 479 times.

Security

No known security issues

Security and license risk for latest version

Release Date: Aug 15, 2023
Direct Vulnerabilities: 0
C
0
H
0
M
0
L
Indirect Vulnerabilities: 0
C
0
H
0
M
0
L
License Risk: 0
H
0
M
0
L

All security vulnerabilities belong to production dependencies of direct and indirect packages.

License

BSD-3-Clause

Security Policy

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Maintenance

Inactive

Commit Frequency

Open Issues: 677
Open PR: 61
Last Release: 1 year ago
Last Commit: 7 days ago

Further analysis of the maintenance status of sourmash-plugin-abundhist based on released PyPI versions cadence, the repository activity, and other data points determined that its maintenance is Inactive.

An important project maintenance signal to consider for sourmash-plugin-abundhist is that it hasn't seen any new versions released to PyPI in the past 12 months, and could be considered as a discontinued project, or that which receives low attention from its maintainers.

As a healthy sign for on-going project maintenance, we found that the GitHub repository had at least 1 pull request or issue interacted with by the community.

Community

Active

Readme: Yes
Contributing.md: Yes
Code of Conduct: Yes
Contributors: 50
Funding: No

With more than 10 contributors for the sourmash-plugin-abundhist repository, this is possibly a sign for a growing and inviting community.

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Package

Python Versions Compatibility: >=3.8

Age: 1 year
Latest Release: 1 year ago
Dependencies: 4 Direct
Versions: 4
Maintainers: 0
Wheels: OS Independent

Readme

sourmash_plugin_abundhist

Installation

pip install sourmash_plugin_abundhist

Usage

Example

Basic command-line usage:

% sourmash scripts abundhist examples/SRR606249-abund-100k.sig.zip

== This is sourmash version 4.8.3.dev0. ==
== Please cite Brown and Irber (2016), doi:10.21105/joss.00027. ==

loaded 1 total that matched ksize & molecule type

36   [3487]  ****************************************
72   [ 485]  ******
107  [ 171]  **
143  [  38]  *
178  [   5]
214  [   3]
249  [   7]  *
285  [   0]
320  [   2]
356  [   2]

Create a nice histogram figure for an isolate reads data set

sourmash scripts abundhist --max 100 --min 1 --bins 100 examples/reads.sig.gz --figure examples/ecoli-reads.png --ymax=200

will create:

histogram

Create a nice histogram figure for a metagenome:

% sourmash scripts abundhist examples/SRR606249-abund-100k.sig.zip --figure hist.png

will create this figure:

histogram

Support

We suggest filing issues in the main sourmash issue tracker as that receives more attention!

Dev docs

abundhist is developed at https://github.com/ctb/sourmash_plugin_abundhist.

Testing

Run:

pytest tests

Generating a release

Bump version number in pyproject.toml and push.

Make a new release on github.

Then pull, and:

python -m build

followed by twine upload dist/....

sourmash-plugin-abundhist dependencies

numpy seaborn sourmash termplotlib

FAQs

What is sourmash-plugin-abundhist?

sourmash plugin to calculate abundance profiles. Visit Snyk Advisor to see a full health score report for sourmash-plugin-abundhist, including popularity, security, maintenance & community analysis.

Is sourmash-plugin-abundhist popular?

The python package sourmash-plugin-abundhist receives a total of 62 weekly downloads. As such, sourmash-plugin-abundhist popularity was classified as limited. Visit the popularity section on Snyk Advisor to see the full health analysis.

Is sourmash-plugin-abundhist well maintained?

We found indications that sourmash-plugin-abundhist is an Inactive project. See the full package health analysis to learn more about the package maintenance status.

Is sourmash-plugin-abundhist safe to use?

The python package sourmash-plugin-abundhist was scanned for known vulnerabilities and missing license, and no issues were found. Thus the package was deemed as safe to use. See the full health analysis review.

Last updated on 18 December-2024, at 11:27 (UTC).

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sourmash-plugin-abundhist

sourmash plugin to calculate abundance profiles. For more information about how to use this package see README

Ensure you're using the healthiest python packages

Package Health Score

Popularity

Direct Usage Popularity

Security

Security and license risk for latest version

Maintenance

Commit Frequency

Community

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Package

Readme

sourmash_plugin_abundhist

Installation

Usage

Example

Basic command-line usage:

Create a nice histogram figure for an isolate reads data set

Create a nice histogram figure for a metagenome:

Support

Dev docs

Testing

Generating a release

sourmash-plugin-abundhist dependencies

FAQs

What is sourmash-plugin-abundhist?

Is sourmash-plugin-abundhist popular?

Is sourmash-plugin-abundhist well maintained?

Is sourmash-plugin-abundhist safe to use?

Build a secure application checklist

Select a recommended open source package

Scan your app for vulnerabilities

Fix identified vulnerabilities

Monitor for new issues

Package Health Score

Direct Usage Popularity

Security and license risk for latest version

Commit Frequency

Embed Package Health Score Badge

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Snyk Vulnerability Scanner

Readme

sourmash_plugin_abundhist

Installation

Usage

Example

Basic command-line usage:

Create a nice histogram figure for an isolate reads data set

Create a nice histogram figure for a metagenome:

Support

Dev docs

Testing

Generating a release

sourmash-plugin-abundhist dependencies

FAQs

What is sourmash-plugin-abundhist?

Is sourmash-plugin-abundhist popular?

Is sourmash-plugin-abundhist well maintained?

Is sourmash-plugin-abundhist safe to use?

Build a secure application checklist

Select a recommended open source package

Scan your app for vulnerabilities

Source Code

Open Source

Container

Config

Fix identified vulnerabilities

Monitor for new issues