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import numpy as np
from matplotlib.ticker import FixedLocator
import matplotlib.pyplot as plt
import astropy.table
try:
from .. import fitting, prep, utils
from . import auto_script
except:
from grizli import prep, utils, fitting
from grizli.pipeline import auto_script
if filter_bandpasses is None:
import pysynphot as S
filter_bandpasses = [S.ObsBandpass(bpstr) for bpstr in ['acs,wfc1,f814w', 'wfc3,ir,f105w', 'wfc3,ir,f110w', 'wfc3,ir,f125w', 'wfc3,ir,f140w', 'wfc3,ir,f160w']]
if os.path.exists('{0}.info.fits'.format(field_root)):
orig = utils.read_catalog('{0}.info.fits'.format(field_root))
all_files = glob.glob('{0}*full.fits'.format(field_root))
all_files.sort()
print('{0}.info.fits: {1} objects. Found {2} full.fits files, checking modify dates.'.format(field_root, len(orig), len(all_files)))
info_mtime = os.stat('{0}.info.fits'.format(field_root)).st_mtime
keep = np.ones(len(orig), dtype=bool)
files = []
for file in all_files:
id = int(file.split('_')[1].split('.full')[0])
if id not in orig['id']:
files.append(file)
else:
MLv = mass_norm / Lv_norm
SFR_norm = (coeffs_norm*tab_temp['sfr']).sum()*u.solMass/u.yr
SFRv = SFR_norm / Lv_norm
mass_var = ((rms_norm*tab_temp['mass'])**2).sum()
Lv_var = ((rms_norm*tab_temp['Lv'])**2).sum()
SFR_var = ((rms_norm*tab_temp['sfr'])**2).sum()
MLv_var = MLv**2 * (mass_var/mass_norm.value**2 + Lv_var/Lv_norm.value**2)
MLv_rms = np.sqrt(MLv_var)
SFRv_var = SFRv**2 * (SFR_var/SFR_norm.value**2 + Lv_var/Lv_norm.value**2)
SFRv_rms = np.sqrt(SFRv_var)
vband = S.ObsBandpass('v')
vbandz = S.ArrayBandpass(vband.wave*(1+z), vband.throughput)
best_templ = utils.SpectrumTemplate(templ['wave'], templ['full'])
fnu = best_templ.integrate_filter(vbandz)*(u.erg/u.s/u.cm**2/u.Hz)
dL = cosmology.luminosity_distance(z).to(u.cm)
Lnu = fnu*4*np.pi*dL**2
pivotV = vbandz.pivot()*u.Angstrom
nuV = (const.c/pivotV).to(u.Hz)
Lv = (nuV*Lnu).to(u.L_sun)
mass = MLv*Lv
SFR = SFRv*Lv
sps = {'Lv':Lv, 'MLv':MLv, 'MLv_rms':MLv_rms, 'SFRv':SFRv, 'SFRv_rms':SFRv_rms, 'templ':best_templ}
import astropy.coordinates as coord
coo = coord.SkyCoord(ra=self.ra, dec=self.dec, unit=(u.deg, u.deg),
frame='icrs')
v = Vizier(catalog=SDSS_CATALOG, columns=['+_r','*'])
try:
tab = v.query_region(coo, radius="{0}s".format(radius),
catalog=SDSS_CATALOG)[0]
ix = np.argmin(tab['rmag'])
tab = tab[ix]
except:
return None
filters = [FilterDefinition(bp=S.ObsBandpass('sdss,{0}'.format(b))) for b in bands]
pivot = {}
for ib, b in enumerate(bands):
pivot[b] = filters[ib].pivot()
#to_flam = 10**(-0.4*(22.5+48.6))*3.e18 # / pivot(Ang)**2
#flam = np.array([xid['modelFlux_{0}'.format(b)][0]*to_flam/pivot[b]**2 for b in bands])
#eflam = np.array([np.sqrt(1/xid['modelFluxIvar_{0}'.format(b)][0])*to_flam/pivot[b]**2 for b in bands])
to_flam = 10**(-0.4*(48.6))*3.e18 # / pivot(Ang)**2
flam = np.array([10**(-0.4*(tab[b+'mag']))*to_flam/pivot[b]**2 for ib, b in enumerate(bands)])
eflam = np.array([tab['e_{0}mag'.format(b)]*np.log(10)/2.5*flam[ib] for ib, b in enumerate(bands)])
phot = {'flam':flam, 'eflam':eflam, 'filters':filters, 'tempfilt':None}
if templ is None:
return phot
"""
import os
import numpy as np
from matplotlib.ticker import FixedLocator
import matplotlib.pyplot as plt
try:
from .. import fitting
from . import auto_script
except:
from grizli import prep, utils, fitting
from grizli.pipeline import auto_script
if filter_bandpasses is None:
import pysynphot as S
filter_bandpasses = [S.ObsBandpass(bpstr) for bpstr in ['acs,wfc1,f814w','wfc3,ir,f105w', 'wfc3,ir,f110w', 'wfc3,ir,f125w', 'wfc3,ir,f140w', 'wfc3,ir,f160w']]
### SUmmary catalog
fit = fitting.make_summary_catalog(target=field_root, sextractor=None,
filter_bandpasses=filter_bandpasses)
fit.meta['root'] = field_root
## Add photometric catalog
sex = utils.GTable.gread('{0}-ir.cat.fits'.format(field_root))
# try:
# except:
# sex = utils.GTable.gread('../Prep/{0}-ir.cat.fits'.format(field_root), sextractor=True)
idx = np.arange(len(sex))
sex_idx = np.array([idx[sex['NUMBER'] == id][0] for id in fit['id']])
'F775W': 7693.297933335407,
'F814W': 8058.784799323767,
'VISTAH':1.6433e+04,
'GRISM': 1.6e4}
no_newline = '\x1b[1A\x1b[1M' # character to skip clearing line on STDOUT printing
### Demo for computing photflam and photplam with pysynphot
if False:
import pysynphot as S
n = 1.e-20
spec = S.FlatSpectrum(n, fluxunits='flam')
photflam = {}
photplam = {}
for filter in ['F098M', 'F105W', 'F110W', 'F125W', 'F140W', 'F160W']:
bp = S.ObsBandpass('wfc3,ir,%s' %(filter.lower()))
photplam[filter] = bp.pivot()
obs = S.Observation(spec, bp)
photflam[filter] = n/obs.countrate()
for filter in ['F435W', 'F606W', 'F775W', 'F814W']:
bp = S.ObsBandpass('acs,wfc1,%s' %(filter.lower()))
photplam[filter] = bp.pivot()
obs = S.Observation(spec, bp)
photflam[filter] = n/obs.countrate()
class GrismFLT(object):
"""
Scripts for simple modeling of individual grism FLT images
tbd: