How to use the pyensembl.species.find_species_by_name function in pyensembl
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openvax / pyensembl / pyensembl / ensembl_url_templates.py View on Github 
def normalize_release_properties(ensembl_release, species):
"""
Make sure a given release is valid, normalize it to be an integer,
normalize the species name, and get its associated reference.
"""
ensembl_release = check_release_number(ensembl_release)
if not isinstance(species, Species):
species = find_species_by_name(species)
reference_name = species.which_reference(ensembl_release)
return ensembl_release, species.latin_name, reference_namedef which_reference(species_name, ensembl_release):
return find_species_by_name(species_name).which_reference(ensembl_release)pyensembl
Python interface to Ensembl reference genome metadata
Package Health Score
61 / 100Popular pyensembl functions
- pyensembl.cached_release
- pyensembl.ensembl_grch37
- pyensembl.ensembl_grch38
- pyensembl.ensembl_grch38.transcripts_by_name
- pyensembl.ensembl_release.EnsemblRelease
- pyensembl.ensembl_release.EnsemblRelease.cached
- pyensembl.ensembl_release_versions.check_release_number
- pyensembl.EnsemblRelease
- pyensembl.find_nearest_locus
- pyensembl.gene.Gene
- pyensembl.Genome
- pyensembl.genome.Genome
- pyensembl.genome_for_reference_name
- pyensembl.locus.Locus
- pyensembl.normalization.normalize_chromosome
- pyensembl.normalization.normalize_strand
- pyensembl.species.find_species_by_name
- pyensembl.species.Species
- pyensembl.species.Species.register
- pyensembl.transcript.Transcript