Package Health Score

78 / 100

security
No known security issues
popularity
Small
maintenance
Healthy
community
Sustainable

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Popularity

Small

GitHub Stars: 590
Forks: 138
Contributors: 50

Direct Usage Popularity

Based on project statistics from the GitHub repository for the PyPI package pycortex, we found that it has been starred 590 times.

Security

No known security issues

Security and license risk for latest version

Release Date: Sep 1, 2024
Direct Vulnerabilities: 0
C
0
H
0
M
0
L
Indirect Vulnerabilities: 0
C
0
H
0
M
0
L
License Risk: 0
H
0
M
0
L

All security vulnerabilities belong to production dependencies of direct and indirect packages.

License

BSD-2-Clause

Security Policy

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Maintenance

Healthy

Commit Frequency

Open Issues: 93
Open PR: 7
Last Release: 2 months ago
Last Commit: 1 month ago

Further analysis of the maintenance status of pycortex based on released PyPI versions cadence, the repository activity, and other data points determined that its maintenance is Healthy.

We found that pycortex demonstrates a positive version release cadence with at least one new version released in the past 3 months.

As a healthy sign for on-going project maintenance, we found that the GitHub repository had at least 1 pull request or issue interacted with by the community.

Community

Sustainable

Readme: Yes
Contributing.md: No
Code of Conduct: No
Contributors: 50
Funding: No

With more than 10 contributors for the pycortex repository, this is possibly a sign for a growing and inviting community.

We found a way for you to contribute to the project! Looks like pycortex is missing a Code of Conduct.

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Package

Python Versions Compatibility: Unspecified

Age: 11 years
Latest Release: 2 months ago
Dependencies: 13 Direct
Versions: 15
Maintainers: 2
Wheels: No

Readme

pycortex

Pycortex is a software library that allows you to visualize fMRI or other volumetric neuroimaging data on cortical surfaces.

Installation

[!NOTE] Pycortex cannot be currently installed in Windows, only Linux and macOS are supported.

To install the stable release version of pycortex, do the following:

# First, install some required dependencies (if not already installed)
pip install -U setuptools wheel numpy cython
# Install the latest release of pycortex from pip
pip install -U pycortex

If you wish to install the development version of pycortex, you can install it directly from Github.

To do so, replace the second install line above with the following:

# Install development version of pycortex from github
pip install -U git+https://github.com/gallantlab/pycortex.git  --no-build-isolation

Documentation

Pycortex documentation is available at https://gallantlab.github.io/pycortex.

You can find many examples of pycortex features in the pycortex example gallery.

To build the documentation locally:

# Install required dependencies for the documentation
pip install sphinx_gallery numpydoc
# Move into the docs folder (assuming already in pycortex directory)
cd docs
# Build a local version of the documentation site
make html

After you run the above, you can open docs/_build/html/index.html in a web browser to view the locally built documentation.

Demo

Pycortex is best used with IPython.

If you do not already have IPython, you can install it by running:

pip install ipython

To run the pycortex demo, using IPython, run:

$ ipython
In [1]: import cortex
In [2]: cortex.webshow(cortex.Volume.random("S1", "fullhead"))

Citation

If you use pycortex in published work, please cite the pycortex paper:

Gao JS, Huth AG, Lescroart MD and Gallant JL (2015) Pycortex: an interactive surface visualizer for fMRI. Front. Neuroinform. 9:23. doi: 10.3389/fninf.2015.00023

pycortex dependencies

future h5py html5lib imageio looseversion lxml matplotlib numexpr numpy pillow scipy setuptools shapely

FAQs

What is pycortex?

Python Cortical mapping software for fMRI data. Visit Snyk Advisor to see a full health score report for pycortex, including popularity, security, maintenance & community analysis.

Is pycortex popular?

The python package pycortex receives a total of 126 weekly downloads. As such, pycortex popularity was classified as small. Visit the popularity section on Snyk Advisor to see the full health analysis.

Is pycortex well maintained?

We found that pycortex demonstrated a healthy version release cadence and project activity. It has a community of 50 open source contributors collaborating on the project. See the full package health analysis to learn more about the package maintenance status.

Is pycortex safe to use?

The python package pycortex was scanned for known vulnerabilities and missing license, and no issues were found. Thus the package was deemed as safe to use. See the full health analysis review.

Last updated on 4 November-2024, at 06:29 (UTC).

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pycortex

Python Cortical mapping software for fMRI data For more information about how to use this package see README

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Package

Readme

pycortex

Installation

Documentation

Demo

Citation

pycortex dependencies

FAQs

What is pycortex?

Is pycortex popular?

Is pycortex well maintained?

Is pycortex safe to use?

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Package Health Score

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Direct Usage Popularity

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Commit Frequency

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Readme

pycortex

Installation

Documentation

Demo

Citation

pycortex dependencies

FAQs

What is pycortex?

Is pycortex popular?

Is pycortex well maintained?

Is pycortex safe to use?

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Source Code

Open Source

Container

Config

Fix identified vulnerabilities

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