Package Health Score

58 / 100

security
No known security issues
popularity
Limited
maintenance
Inactive
community
Sustainable

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Popularity

Limited

GitHub Stars: 3
Forks: 8
Contributors: 8

Direct Usage Popularity

Based on project statistics from the GitHub repository for the PyPI package pyBiodatafuse, we found that it has been starred 3 times.

Security

No known security issues

Security and license risk for latest version

Release Date: Oct 31, 2023
Direct Vulnerabilities: 0
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0
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0
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0
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Indirect Vulnerabilities: 0
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0
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0
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License Risk: 0
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0
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All security vulnerabilities belong to production dependencies of direct and indirect packages.

License

MIT

Security Policy

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Maintenance

Inactive

Commit Frequency

Open Issues: 24
Open PR: 6
Last Release: 1 year ago
Last Commit: 1 month ago

Further analysis of the maintenance status of pyBiodatafuse based on released PyPI versions cadence, the repository activity, and other data points determined that its maintenance is Inactive.

An important project maintenance signal to consider for pyBiodatafuse is that it hasn't seen any new versions released to PyPI in the past 12 months, and could be considered as a discontinued project, or that which receives low attention from its maintainers.

As a healthy sign for on-going project maintenance, we found that the GitHub repository had at least 1 pull request or issue interacted with by the community.

Community

Sustainable

Readme: Yes
Contributing.md: Yes
Code of Conduct: Yes
Contributors: 8
Funding: No

This project has seen only 10 or less contributors.

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Package

Python Versions Compatibility: >=3.8

Age: 1 year
Latest Release: 1 year ago
Dependencies: 5 Direct
Versions: 3
Maintainers: 2
Wheels: OS Independent

Readme

pyBioDataFuse

A python package for integrating data from multiple resources

💪 Getting Started

> TODO show in a very small amount of space the MOST useful thing your package can do. > Make it as short as possible! You have an entire set of docs for later.

Command Line Interface

The pyBiodatafuse command line tool is automatically installed. It can be used from the shell with the --help flag to show all subcommands:

$ pyBiodatafuse --help

> TODO show the most useful thing the CLI does! The CLI will have documentation auto-generated > by sphinx.

🚀 Installation

The most recent release can be installed from PyPI with:

$ pip install pyBiodatafuse

The most recent code and data can be installed directly from GitHub with:

$ pip install git+https://github.com/BioDataFuse/pyBiodatafuse.git

👐 Contributing

Contributions, whether filing an issue, making a pull request, or forking, are appreciated. See CONTRIBUTING.md for more information on getting involved.

👋 Attribution

⚖️ License

The code in this package is licensed under the MIT License.

🍪 Cookiecutter

This package was created with @audreyfeldroy's cookiecutter package using @cthoyt's cookiecutter-snekpack template.

🛠️ For Developers

See developer instructions

The final section of the README is for if you want to get involved by making a code contribution.

Development Installation

To install in development mode, use the following:

$ git clone git+https://github.com/BioDataFuse/pyBiodatafuse.git
$ cd pyBiodatafuse
$ pip install -e .

🥼 Testing

After cloning the repository and installing tox with pip install tox, the unit tests in the tests/ folder can be run reproducibly with:

$ tox

Additionally, these tests are automatically re-run with each commit in a GitHub Action.

📖 Building the Documentation

The documentation can be built locally using the following:

$ git clone git+https://github.com/BioDataFuse/pyBiodatafuse.git
$ cd pyBiodatafuse
$ tox -e docs
$ open docs/build/html/index.html

The documentation automatically installs the package as well as the docs extra specified in the setup.cfg. sphinx plugins like texext can be added there. Additionally, they need to be added to the extensions list in docs/source/conf.py.

📦 Making a Release

After installing the package in development mode and installing tox with pip install tox, the commands for making a new release are contained within the finish environment in tox.ini. Run the following from the shell:

$ tox -e finish

This script does the following:

Uses Bump2Version to switch the version number in the setup.cfg, src/pyBiodatafuse/version.py, and docs/source/conf.py to not have the -dev suffix
Packages the code in both a tar archive and a wheel using build
Uploads to PyPI using twine. Be sure to have a .pypirc file configured to avoid the need for manual input at this step
Push to GitHub. You'll need to make a release going with the commit where the version was bumped.
Bump the version to the next patch. If you made big changes and want to bump the version by minor, you can use tox -e bumpversion -- minor after.

pyBiodatafuse dependencies

click pandas requests sparqlwrapper tqdm

FAQs

What is pyBiodatafuse?

A python package for integrating data from multiple resources. Visit Snyk Advisor to see a full health score report for pyBiodatafuse, including popularity, security, maintenance & community analysis.

Is pyBiodatafuse popular?

The python package pyBiodatafuse receives a total of 47 weekly downloads. As such, pyBiodatafuse popularity was classified as limited. Visit the popularity section on Snyk Advisor to see the full health analysis.

Is pyBiodatafuse well maintained?

We found indications that pyBiodatafuse is an Inactive project. See the full package health analysis to learn more about the package maintenance status.

Is pyBiodatafuse safe to use?

The python package pyBiodatafuse was scanned for known vulnerabilities and missing license, and no issues were found. Thus the package was deemed as safe to use. See the full health analysis review.

Last updated on 6 November-2024, at 04:01 (UTC).

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