Package Health Score

64 / 100

security
No known security issues
popularity
Small
maintenance
Sustainable
community
Limited

Popularity

Small

GitHub Stars: 0
Forks: 0
Contributors: 4

Direct Usage Popularity

Based on project statistics from the GitHub repository for the PyPI package pub.tools, we found that it has been starred ? times.

Security

No known security issues

Security and license risk for latest version

Release Date: Oct 22, 2024
Direct Vulnerabilities: 0
C
0
H
0
M
0
L
Indirect Vulnerabilities: 0
C
0
H
0
M
0
L
License Risk: 0
H
0
M
0
L

All security vulnerabilities belong to production dependencies of direct and indirect packages.

License

GPL-3.0

Non-Permissive License

We noticed that this project uses a license which requires less permissive conditions such as disclosing the source code, stating changes or redistributing the source under the same license. It is advised to further consult the license terms before use.

Security Policy

We found a way for you to contribute to the project! Looks like pub.tools is missing a security policy.

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Maintenance

Sustainable

Commit Frequency

Open Issues: 0
Open PR: 0
Last Release: 15 days ago
Last Commit: 15 days ago

Further analysis of the maintenance status of pub.tools based on released PyPI versions cadence, the repository activity, and other data points determined that its maintenance is Sustainable.

We found that pub.tools demonstrates a positive version release cadence with at least one new version released in the past 3 months.

In the past month we didn't find any pull request activity or change in issues status has been detected for the GitHub repository.

Community

Limited

Readme: Yes
Contributing.md: No
Code of Conduct: No
Contributors: 4
Funding: No

This project has seen only 10 or less contributors.

We found a way for you to contribute to the project! Looks like pub.tools is missing a Code of Conduct.

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Package

Python Versions Compatibility: >=3.11

Age: 5 years
Latest Release: 15 days ago
Dependencies: 5 Direct
Versions: 23
Maintainers: 1
Wheels: No

Readme

Installation

pip install pub.tools

To use this tool you are advised to create an Entrez account and use the associated email and API key.

from Bio import Entrez
Entrez.email = "myemailhere@imsweb.com"
Entrez.tool = "pub.tools"
Entrez.api_key = "mykeyhere"

Tools available:

entrez - a wrapper API for BioPython
citations - creates citations for 6 different types using IMS standards
date - formats dates into our desired format

Citations

Citations are based on a standard defined by PubMed https://www.ncbi.nlm.nih.gov/books/NBK7256/. For some publication types, passing the italicize parameter with a True value will return HTML with italic tagged journals or conference names.

You can easily create a citation from a retrieved PubMed record:

>>> from pub.tools import entrez
>>> from pub.tools import citations
>>> if pub := entrez.get_publication(pmid=12345678):
>>>     citations.publication_citation(publication=pub)

Alternatively, you can pass one of the following to the citation function:

An instance of one of the dataclasses in schema.py
Keyword arguments directly

Journals

The journals module uses the PMC source file https://www.ncbi.nlm.nih.gov/pmc/journals/?format=csv to construct a library of journals keyed by abbreviation or full title.

pub.tools dependencies

beautifulsoup4 deprecation lxml requests unidecode

FAQs

What is pub.tools?

Get publication metadata from NCBI's eUtils and generate citations. Visit Snyk Advisor to see a full health score report for pub.tools, including popularity, security, maintenance & community analysis.

Is pub.tools popular?

The python package pub.tools receives a total of 2,882 weekly downloads. As such, pub.tools popularity was classified as small. Visit the popularity section on Snyk Advisor to see the full health analysis.

Is pub.tools well maintained?

We found indications that pub.tools maintenance is sustainable demonstrating some project activity. We saw a total of 4 open source contributors collaborating on the project. See the full package health analysis to learn more about the package maintenance status.

Is pub.tools safe to use?

The python package pub.tools was scanned for known vulnerabilities and missing license, and no issues were found. Thus the package was deemed as safe to use. See the full health analysis review.

Last updated on 30 October-2024, at 06:54 (UTC).

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pub.tools

Get publication metadata from NCBI's eUtils and generate citations. For more information about how to use this package see README

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Package Health Score

Popularity

Direct Usage Popularity

Security

Security and license risk for latest version

Non-Permissive License

Maintenance

Commit Frequency

Community

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Package

Readme

Installation

Citations

Journals

pub.tools dependencies

FAQs

What is pub.tools?

Is pub.tools popular?

Is pub.tools well maintained?

Is pub.tools safe to use?

Build a secure application checklist

Select a recommended open source package

Scan your app for vulnerabilities

Fix identified vulnerabilities

Monitor for new issues

Package Health Score

Direct Usage Popularity

Security and license risk for latest version

Commit Frequency

Embed Package Health Score Badge

Keep your project healthy

Check your requirements.txt

Snyk Vulnerability Scanner

Readme

Installation

Citations

Journals

pub.tools dependencies

FAQs

What is pub.tools?

Is pub.tools popular?

Is pub.tools well maintained?

Is pub.tools safe to use?

Build a secure application checklist

Select a recommended open source package

Scan your app for vulnerabilities

Source Code

Open Source

Container

Config

Fix identified vulnerabilities

Monitor for new issues