How to use the pgmpy.utils.mathext.powerset function in pgmpy

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github pgmpy / pgmpy / pgmpy / estimators / MmhcEstimator.py View on Github external
def min_assoc(X, Y, Zs):
            "Minimal association of X, Y given any subset of Zs."
            return min(assoc(X, Y, Zs_subset) for Zs_subset in powerset(Zs))
github pgmpy / pgmpy / pgmpy / estimators / MmhcEstimator.py View on Github external
neighbors[node] = []

            # Forward Phase
            while True:
                new_neighbor, new_neighbor_min_assoc = max_min_heuristic(
                    node, neighbors[node]
                )
                if new_neighbor_min_assoc > 0:
                    neighbors[node].append(new_neighbor)
                else:
                    break

            # Backward Phase
            for neigh in neighbors[node]:
                other_neighbors = [n for n in neighbors[node] if n != neigh]
                for sep_set in powerset(other_neighbors):
                    if self.test_conditional_independence(node, neigh, sep_set):
                        neighbors[node].remove(neigh)
                        break

        # correct for false positives
        for node in nodes:
            for neigh in neighbors[node]:
                if node not in neighbors[neigh]:
                    neighbors[node].remove(neigh)

        skel = UndirectedGraph()
        skel.add_nodes_from(nodes)
        for node in nodes:
            skel.add_edges_from([(node, neigh) for neigh in neighbors[node]])

        return skel
github pgmpy / pgmpy / pgmpy / estimators / ExhaustiveSearch.py View on Github external
[('Weather', 'Humidity'), ('Weather', 'Temperature'), ('Temperature', 'Humidity')]]

        """
        if nodes is None:
            nodes = sorted(self.state_names.keys())
        if len(nodes) > 6:
            warn("Generating all DAGs of n nodes likely not feasible for n>6!")
            warn(
                "Attempting to search through {0} graphs".format(
                    2 ** (len(nodes) * (len(nodes) - 1))
                )
            )

        edges = list(combinations(nodes, 2))  # n*(n-1) possible directed edges
        edges.extend([(y, x) for x, y in edges])
        all_graphs = powerset(edges)  # 2^(n*(n-1)) graphs

        for graph_edges in all_graphs:
            graph = nx.DiGraph()
            graph.add_nodes_from(nodes)
            graph.add_edges_from(graph_edges)
            if nx.is_directed_acyclic_graph(graph):
                yield graph