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def setUp(self):
super(SurpriseVertexPartitionTest, self).setUp();
self.partition_type = leidenalg.SurpriseVertexPartition;
k=k, use_pca=use_pca, use_hnsw=use_hnsw,
index_params=index_params, query_params=query_params,
verbose=verbose)
graph = SampleDistanceMatrix.knn_conn_mat_to_aff_graph(
knn_conn_mat, aff_scale=aff_scale)
if partition_method == "RBConfigurationVertexPartition":
la_part_cls = la.RBConfigurationVertexPartition
elif partition_method == "RBERVertexPartition":
la_part_cls = la.RBERVertexPartition
elif partition_method == "CPMVertexPartition":
la_part_cls = la.CPMVertexPartition
elif partition_method == "SignificanceVertexPartition":
la_part_cls = la.SignificanceVertexPartition
elif partition_method == "SurpriseVertexPartition":
la_part_cls = la.SurpriseVertexPartition
else:
raise ValueError(
"Unknown partition method: {}".format(partition_method))
la_res = la.find_partition(graph, la.RBConfigurationVertexPartition,
seed=random_state, weights='weight',
resolution_parameter=resolution)
# keep track of results and parameters
self._graph = graph
self._la_res = la_res
self._labs = la_res.membership
self._k = k
self._use_pca = use_pca
self._use_hnsw = use_hnsw
self._index_params = index_params
self._query_params = query_params