How to use the hail.python.hail.ir.ir.register_function function in hail
To help you get started, we’ve selected a few hail examples, based on popular ways it is used in public projects.
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hail-is / hail / hail / python / hail / ir / register_functions.py View on Github 
register_function("remove", (dtype("set"),dtype("?T"),), dtype("set"))
register_function("[]", (dtype("str"),dtype("int32"),), dtype("str"))
register_function("indexArray", (dtype("array"),dtype("int32"),), dtype("?T"))
register_function("[]", (dtype("dict"),dtype("?key"),), dtype("?value"))
register_function("dictToArray", (dtype("dict"),), dtype("array"))
register_function("%", (dtype("array"),dtype("array"),), dtype("array"))
register_function("%", (dtype("array"),dtype("?T"),), dtype("array"))
register_function("%", (dtype("?T:numeric"),dtype("array"),), dtype("array"))
register_function("%", (dtype("ndarray"),dtype("ndarray"),), dtype("ndarray"))
register_function("%", (dtype("ndarray"),dtype("?T"),), dtype("ndarray"))
register_function("%", (dtype("?T:numeric"),dtype("ndarray"),), dtype("ndarray"))
register_function("dict", (dtype("array"),), dtype("dict"))
register_function("dict", (dtype("set"),), dtype("dict"))
register_function("keys", (dtype("dict"),), dtype("array"))
register_function("min", (dtype("array"),), dtype("?T"))
register_function("nanmin", (dtype("array"),), dtype("?T"))
register_function("min", (dtype("?T"),dtype("?T"),), dtype("?T"))
register_function("nanmin", (dtype("?T"),dtype("?T"),), dtype("?T"))
register_function("min_ignore_missing", (dtype("?T"),dtype("?T"),), dtype("?T"))
register_function("nanmin_ignore_missing", (dtype("?T"),dtype("?T"),), dtype("?T"))
register_function("sum", (dtype("array"),), dtype("?T"))
register_function("toInt64", (dtype("?T:numeric"),), dtype("int64"))
register_function("contains", (dtype("dict"),dtype("?key"),), dtype("bool"))
register_function("contains", (dtype("array"),dtype("?T"),), dtype("bool"))
register_function("contains", (dtype("set"),dtype("?T"),), dtype("bool"))
register_function("-", (dtype("array"),dtype("?T"),), dtype("array"))
register_function("-", (dtype("array"),dtype("array"),), dtype("array"))
register_function("-", (dtype("?T:numeric"),dtype("array"),), dtype("array"))
register_function("-", (dtype("ndarray"),dtype("ndarray"),), dtype("ndarray"))
register_function("-", (dtype("ndarray"),dtype("?T"),), dtype("ndarray"))
register_function("-", (dtype("?T:numeric"),dtype("ndarray"),), dtype("ndarray"))
register_function("addone", (dtype("int32"),), dtype("int32"))register_function("dpois", (dtype("float64"),dtype("float64"),dtype("bool"),), dtype("float64"))
register_function("dpois", (dtype("float64"),dtype("float64"),), dtype("float64"))
register_function("ploidy", (dtype("call"),), dtype("int32"))
register_function("||", (dtype("bool"),dtype("bool"),), dtype("bool"))
register_function("ppois", (dtype("float64"),dtype("float64"),dtype("bool"),dtype("bool"),), dtype("float64"))
register_function("ppois", (dtype("float64"),dtype("float64"),), dtype("float64"))
register_function("log10", (dtype("float64"),), dtype("float64"))
register_function("isHet", (dtype("call"),), dtype("bool"))
register_function("isAutosomalOrPseudoAutosomal", (dtype("?T:locus"),), dtype("bool"))
register_function("testCodeUnification", (dtype("?x:numeric"),dtype("?x:int32"),), dtype("?x"))
register_seeded_function("rand_pois", (dtype("float64"),), dtype("float64"))
register_seeded_function("rand_pois", (dtype("int32"),dtype("float64"),), dtype("array"))
register_function("toFloat32", (dtype("str"),), dtype("float32"))
register_function("toFloat32", (dtype("bool"),), dtype("float32"))
register_function("isAutosomal", (dtype("?T:locus"),), dtype("bool"))
register_function("isPhased", (dtype("call"),), dtype("bool"))
register_function("isHomVar", (dtype("call"),), dtype("bool"))
register_function("corr", (dtype("array"),dtype("array"),), dtype("float64"))
register_function("log", (dtype("float64"),dtype("float64"),), dtype("float64"))
register_function("log", (dtype("float64"),), dtype("float64"))
register_function("foobar2", (), dtype("int32"))
register_function("approxEqual", (dtype("float64"),dtype("float64"),dtype("float64"),dtype("bool"),dtype("bool"),), dtype("bool"))
register_function("plDosage", (dtype("array"),), dtype("float64"))
register_function("includesEnd", (dtype("interval"),), dtype("bool"))
register_function("position", (dtype("?T:locus"),), dtype("int32"))
register_seeded_function("rand_unif", (dtype("float64"),dtype("float64"),), dtype("float64"))
register_function("showStr", (dtype("?T"), dtype("int32")), dtype("str"))
register_function("str", (dtype("?T"),), dtype("str"))
register_function("valuesSimilar", (dtype("?T"),dtype("?T"),dtype('float64'),dtype('bool'),), dtype("bool"))
register_function("replace", (dtype("str"),dtype("str"),dtype("str"),), dtype("str"))
register_function("exp", (dtype("float64"),), dtype("float64"))
register_function("&&", (dtype("bool"),dtype("bool"),), dtype("bool"))register_function("isAutosomal", (dtype("?T:locus"),), dtype("bool"))
register_function("isPhased", (dtype("call"),), dtype("bool"))
register_function("isHomVar", (dtype("call"),), dtype("bool"))
register_function("corr", (dtype("array"),dtype("array"),), dtype("float64"))
register_function("log", (dtype("float64"),dtype("float64"),), dtype("float64"))
register_function("log", (dtype("float64"),), dtype("float64"))
register_function("foobar2", (), dtype("int32"))
register_function("approxEqual", (dtype("float64"),dtype("float64"),dtype("float64"),dtype("bool"),dtype("bool"),), dtype("bool"))
register_function("plDosage", (dtype("array"),), dtype("float64"))
register_function("includesEnd", (dtype("interval"),), dtype("bool"))
register_function("position", (dtype("?T:locus"),), dtype("int32"))
register_seeded_function("rand_unif", (dtype("float64"),dtype("float64"),), dtype("float64"))
register_function("showStr", (dtype("?T"), dtype("int32")), dtype("str"))
register_function("str", (dtype("?T"),), dtype("str"))
register_function("valuesSimilar", (dtype("?T"),dtype("?T"),dtype('float64'),dtype('bool'),), dtype("bool"))
register_function("replace", (dtype("str"),dtype("str"),dtype("str"),), dtype("str"))
register_function("exp", (dtype("float64"),), dtype("float64"))
register_function("&&", (dtype("bool"),dtype("bool"),), dtype("bool"))
register_function("compare", (dtype("int32"),dtype("int32"),), dtype("int32"))
register_function("triangle", (dtype("int32"),), dtype("int32"))
register_function("Interval", (dtype("?T"),dtype("?T"),dtype("bool"),dtype("bool"),), dtype("interval"))
register_function("contig", (dtype("?T:locus"),), dtype("str"))
register_function("Call", (dtype("bool"),), dtype("call"))
register_function("Call", (dtype("str"),), dtype("call"))
register_function("Call", (dtype("int32"),dtype("bool"),), dtype("call"))
register_function("Call", (dtype("int32"),dtype("int32"),dtype("bool"),), dtype("call"))
register_function("Call", (dtype("array"),dtype("bool"),), dtype("call"))
register_function("qchisqtail", (dtype("float64"),dtype("float64"),), dtype("float64"))
register_function("binomTest", (dtype("int32"),dtype("int32"),dtype("float64"),dtype("int32"),), dtype("float64"))
register_function("qpois", (dtype("float64"),dtype("float64"),), dtype("int32"))
register_function("qpois", (dtype("float64"),dtype("float64"),dtype("bool"),dtype("bool"),), dtype("int32"))
register_function("is_finite", (dtype("float32"),), dtype("bool"))register_function("||", (dtype("bool"),dtype("bool"),), dtype("bool"))
register_function("ppois", (dtype("float64"),dtype("float64"),dtype("bool"),dtype("bool"),), dtype("float64"))
register_function("ppois", (dtype("float64"),dtype("float64"),), dtype("float64"))
register_function("log10", (dtype("float64"),), dtype("float64"))
register_function("isHet", (dtype("call"),), dtype("bool"))
register_function("isAutosomalOrPseudoAutosomal", (dtype("?T:locus"),), dtype("bool"))
register_function("testCodeUnification", (dtype("?x:numeric"),dtype("?x:int32"),), dtype("?x"))
register_seeded_function("rand_pois", (dtype("float64"),), dtype("float64"))
register_seeded_function("rand_pois", (dtype("int32"),dtype("float64"),), dtype("array"))
register_function("toFloat32", (dtype("str"),), dtype("float32"))
register_function("toFloat32", (dtype("bool"),), dtype("float32"))
register_function("isAutosomal", (dtype("?T:locus"),), dtype("bool"))
register_function("isPhased", (dtype("call"),), dtype("bool"))
register_function("isHomVar", (dtype("call"),), dtype("bool"))
register_function("corr", (dtype("array"),dtype("array"),), dtype("float64"))
register_function("log", (dtype("float64"),dtype("float64"),), dtype("float64"))
register_function("log", (dtype("float64"),), dtype("float64"))
register_function("foobar2", (), dtype("int32"))
register_function("approxEqual", (dtype("float64"),dtype("float64"),dtype("float64"),dtype("bool"),dtype("bool"),), dtype("bool"))
register_function("plDosage", (dtype("array"),), dtype("float64"))
register_function("includesEnd", (dtype("interval"),), dtype("bool"))
register_function("position", (dtype("?T:locus"),), dtype("int32"))
register_seeded_function("rand_unif", (dtype("float64"),dtype("float64"),), dtype("float64"))
register_function("showStr", (dtype("?T"), dtype("int32")), dtype("str"))
register_function("str", (dtype("?T"),), dtype("str"))
register_function("valuesSimilar", (dtype("?T"),dtype("?T"),dtype('float64'),dtype('bool'),), dtype("bool"))
register_function("replace", (dtype("str"),dtype("str"),dtype("str"),), dtype("str"))
register_function("exp", (dtype("float64"),), dtype("float64"))
register_function("&&", (dtype("bool"),dtype("bool"),), dtype("bool"))
register_function("compare", (dtype("int32"),dtype("int32"),), dtype("int32"))
register_function("triangle", (dtype("int32"),), dtype("int32"))
register_function("Interval", (dtype("?T"),dtype("?T"),dtype("bool"),dtype("bool"),), dtype("interval"))register_function("contains", (dtype("str"),dtype("str"),), dtype("bool"))
register_function("contains", (dtype("interval"),dtype("?T"),), dtype("bool"))
register_function("entropy", (dtype("str"),), dtype("float64"))
register_function("filtering_allele_frequency", (dtype("int32"),dtype("int32"),dtype("float64"),), dtype("float64"))
register_function("gqFromPL", (dtype("array"),), dtype("int32"))
register_function("startswith", (dtype("str"),dtype("str"),), dtype("bool"))
register_function("ceil", (dtype("float32"),), dtype("float32"))
register_function("ceil", (dtype("float64"),), dtype("float64"))
register_function("json", (dtype("?T"),), dtype("str"))
register_function("strip", (dtype("str"),), dtype("str"))
register_function("firstMatchIn", (dtype("str"),dtype("str"),), dtype("array"))
register_function("isEmpty", (dtype("interval"),), dtype("bool"))
register_function("~", (dtype("str"),dtype("str"),), dtype("bool"))
register_function("mkString", (dtype("set"),dtype("str"),), dtype("str"))
register_function("mkString", (dtype("array"),dtype("str"),), dtype("str"))
register_function("dosage", (dtype("array"),), dtype("float64"))
register_function("upper", (dtype("str"),), dtype("str"))
register_function("overlaps", (dtype("interval"),dtype("interval"),), dtype("bool"))
register_function("downcode", (dtype("call"),dtype("int32"),), dtype("call"))
register_function("inXPar", (dtype("?T:locus"),), dtype("bool"))
register_function("format", (dtype("str"),dtype("?T:tuple"),), dtype("str"))
register_function("pnorm", (dtype("float64"),), dtype("float64"))
register_function("is_infinite", (dtype("float32"),), dtype("bool"))
register_function("is_infinite", (dtype("float64"),), dtype("bool"))
register_function("isHetRef", (dtype("call"),), dtype("bool"))
register_function("isMitochondrial", (dtype("?T:locus"),), dtype("bool"))
register_function("hamming", (dtype("str"),dtype("str"),), dtype("int32"))
register_function("end", (dtype("interval"),), dtype("?T"))
register_function("start", (dtype("interval"),), dtype("?T"))
register_function("inXNonPar", (dtype("?T:locus"),), dtype("bool"))
register_function("escapeString", (dtype("str"),), dtype("str"))
register_function("isHomRef", (dtype("call"),), dtype("bool"))register_function("entropy", (dtype("str"),), dtype("float64"))
register_function("filtering_allele_frequency", (dtype("int32"),dtype("int32"),dtype("float64"),), dtype("float64"))
register_function("gqFromPL", (dtype("array"),), dtype("int32"))
register_function("startswith", (dtype("str"),dtype("str"),), dtype("bool"))
register_function("ceil", (dtype("float32"),), dtype("float32"))
register_function("ceil", (dtype("float64"),), dtype("float64"))
register_function("json", (dtype("?T"),), dtype("str"))
register_function("strip", (dtype("str"),), dtype("str"))
register_function("firstMatchIn", (dtype("str"),dtype("str"),), dtype("array"))
register_function("isEmpty", (dtype("interval"),), dtype("bool"))
register_function("~", (dtype("str"),dtype("str"),), dtype("bool"))
register_function("mkString", (dtype("set"),dtype("str"),), dtype("str"))
register_function("mkString", (dtype("array"),dtype("str"),), dtype("str"))
register_function("dosage", (dtype("array"),), dtype("float64"))
register_function("upper", (dtype("str"),), dtype("str"))
register_function("overlaps", (dtype("interval"),dtype("interval"),), dtype("bool"))
register_function("downcode", (dtype("call"),dtype("int32"),), dtype("call"))
register_function("inXPar", (dtype("?T:locus"),), dtype("bool"))
register_function("format", (dtype("str"),dtype("?T:tuple"),), dtype("str"))
register_function("pnorm", (dtype("float64"),), dtype("float64"))
register_function("is_infinite", (dtype("float32"),), dtype("bool"))
register_function("is_infinite", (dtype("float64"),), dtype("bool"))
register_function("isHetRef", (dtype("call"),), dtype("bool"))
register_function("isMitochondrial", (dtype("?T:locus"),), dtype("bool"))
register_function("hamming", (dtype("str"),dtype("str"),), dtype("int32"))
register_function("end", (dtype("interval"),), dtype("?T"))
register_function("start", (dtype("interval"),), dtype("?T"))
register_function("inXNonPar", (dtype("?T:locus"),), dtype("bool"))
register_function("escapeString", (dtype("str"),), dtype("str"))
register_function("isHomRef", (dtype("call"),), dtype("bool"))
register_seeded_function("rand_norm", (dtype("float64"),dtype("float64"),), dtype("float64"))
register_function("chi_squared_test", (dtype("int32"),dtype("int32"),dtype("int32"),dtype("int32"),), dtype("struct{p_value: float64, odds_ratio: float64}"))register_function("floor", (dtype("float32"),), dtype("float32"))
register_function("isNonRef", (dtype("call"),), dtype("bool"))
register_function("includesStart", (dtype("interval"),), dtype("bool"))
register_function("isHetNonRef", (dtype("call"),), dtype("bool"))
register_function("hardy_weinberg_test", (dtype("int32"),dtype("int32"),dtype("int32"),), dtype("struct{het_freq_hwe: float64, p_value: float64}"))
register_function("haplotype_freq_em", (dtype("array"),), dtype("array"))
register_function("nNonRefAlleles", (dtype("call"),), dtype("int32"))
register_function("abs", (dtype("float64"),), dtype("float64"))
register_function("abs", (dtype("float32"),), dtype("float32"))
register_function("abs", (dtype("int64"),), dtype("int64"))
register_function("abs", (dtype("int32"),), dtype("int32"))
register_function("endswith", (dtype("str"),dtype("str"),), dtype("bool"))
register_function("sqrt", (dtype("float64"),), dtype("float64"))
register_function("isnan", (dtype("float32"),), dtype("bool"))
register_function("isnan", (dtype("float64"),), dtype("bool"))
register_function("lower", (dtype("str"),), dtype("str"))
register_seeded_function("rand_beta", (dtype("float64"),dtype("float64"),), dtype("float64"))
register_seeded_function("rand_beta", (dtype("float64"),dtype("float64"),dtype("float64"),dtype("float64"),), dtype("float64"))
register_function("toInt64", (dtype("bool"),), dtype("int64"))
register_function("toInt64", (dtype("str"),), dtype("int64"))
register_function("testCodeUnification2", (dtype("?x"),), dtype("?x"))
register_function("contains", (dtype("str"),dtype("str"),), dtype("bool"))
register_function("contains", (dtype("interval"),dtype("?T"),), dtype("bool"))
register_function("entropy", (dtype("str"),), dtype("float64"))
register_function("filtering_allele_frequency", (dtype("int32"),dtype("int32"),dtype("float64"),), dtype("float64"))
register_function("gqFromPL", (dtype("array"),), dtype("int32"))
register_function("startswith", (dtype("str"),dtype("str"),), dtype("bool"))
register_function("ceil", (dtype("float32"),), dtype("float32"))
register_function("ceil", (dtype("float64"),), dtype("float64"))
register_function("json", (dtype("?T"),), dtype("str"))
register_function("strip", (dtype("str"),), dtype("str"))
register_function("firstMatchIn", (dtype("str"),dtype("str"),), dtype("array"))def register_functions():
from hail.expr.types import dtype
register_function("flatten", (dtype("array>"),), dtype("array"))
register_function("difference", (dtype("set"),dtype("set"),), dtype("set"))
register_function("median", (dtype("set"),), dtype("?T"))
register_function("median", (dtype("array"),), dtype("?T"))
register_function("uniqueMinIndex", (dtype("array"),), dtype("int32"))
register_function("mean", (dtype("array"),), dtype("float64"))
register_function("toFloat32", (dtype("?T:numeric"),), dtype("float32"))
register_function("uniqueMaxIndex", (dtype("array"),), dtype("int32"))
register_function("toSet", (dtype("array"),), dtype("set"))
def array_floating_point_divide(arg_type, ret_type):
register_function("/", (arg_type, hl.tarray(arg_type),), hl.tarray(ret_type))
register_function("/", (hl.tarray(arg_type),arg_type), hl.tarray(ret_type))
register_function("/", (hl.tarray(arg_type),hl.tarray(arg_type)), hl.tarray(ret_type))
array_floating_point_divide(hl.tint32, hl.tfloat32)
array_floating_point_divide(hl.tint64, hl.tfloat32)
array_floating_point_divide(hl.tfloat32, hl.tfloat32)
array_floating_point_divide(hl.tfloat64, hl.tfloat64)register_function("%", (dtype("array"),dtype("array"),), dtype("array"))
register_function("%", (dtype("array"),dtype("?T"),), dtype("array"))
register_function("%", (dtype("?T:numeric"),dtype("array"),), dtype("array"))
register_function("%", (dtype("ndarray"),dtype("ndarray"),), dtype("ndarray"))
register_function("%", (dtype("ndarray"),dtype("?T"),), dtype("ndarray"))
register_function("%", (dtype("?T:numeric"),dtype("ndarray"),), dtype("ndarray"))
register_function("dict", (dtype("array"),), dtype("dict"))
register_function("dict", (dtype("set"),), dtype("dict"))
register_function("keys", (dtype("dict"),), dtype("array"))
register_function("min", (dtype("array"),), dtype("?T"))
register_function("nanmin", (dtype("array"),), dtype("?T"))
register_function("min", (dtype("?T"),dtype("?T"),), dtype("?T"))
register_function("nanmin", (dtype("?T"),dtype("?T"),), dtype("?T"))
register_function("min_ignore_missing", (dtype("?T"),dtype("?T"),), dtype("?T"))
register_function("nanmin_ignore_missing", (dtype("?T"),dtype("?T"),), dtype("?T"))
register_function("sum", (dtype("array"),), dtype("?T"))
register_function("toInt64", (dtype("?T:numeric"),), dtype("int64"))
register_function("contains", (dtype("dict"),dtype("?key"),), dtype("bool"))
register_function("contains", (dtype("array"),dtype("?T"),), dtype("bool"))
register_function("contains", (dtype("set"),dtype("?T"),), dtype("bool"))
register_function("-", (dtype("array"),dtype("?T"),), dtype("array"))
register_function("-", (dtype("array"),dtype("array"),), dtype("array"))
register_function("-", (dtype("?T:numeric"),dtype("array"),), dtype("array"))
register_function("-", (dtype("ndarray"),dtype("ndarray"),), dtype("ndarray"))
register_function("-", (dtype("ndarray"),dtype("?T"),), dtype("ndarray"))
register_function("-", (dtype("?T:numeric"),dtype("ndarray"),), dtype("ndarray"))
register_function("addone", (dtype("int32"),), dtype("int32"))
register_function("isEmpty", (dtype("dict"),), dtype("bool"))
register_function("isEmpty", (dtype("array"),), dtype("bool"))
register_function("isEmpty", (dtype("set"),), dtype("bool"))
register_function("[:]", (dtype("array"),), dtype("array"))
register_function("[:]", (dtype("str"),), dtype("str"))register_function("isnan", (dtype("float64"),), dtype("bool"))
register_function("lower", (dtype("str"),), dtype("str"))
register_seeded_function("rand_beta", (dtype("float64"),dtype("float64"),), dtype("float64"))
register_seeded_function("rand_beta", (dtype("float64"),dtype("float64"),dtype("float64"),dtype("float64"),), dtype("float64"))
register_function("toInt64", (dtype("bool"),), dtype("int64"))
register_function("toInt64", (dtype("str"),), dtype("int64"))
register_function("testCodeUnification2", (dtype("?x"),), dtype("?x"))
register_function("contains", (dtype("str"),dtype("str"),), dtype("bool"))
register_function("contains", (dtype("interval"),dtype("?T"),), dtype("bool"))
register_function("entropy", (dtype("str"),), dtype("float64"))
register_function("filtering_allele_frequency", (dtype("int32"),dtype("int32"),dtype("float64"),), dtype("float64"))
register_function("gqFromPL", (dtype("array"),), dtype("int32"))
register_function("startswith", (dtype("str"),dtype("str"),), dtype("bool"))
register_function("ceil", (dtype("float32"),), dtype("float32"))
register_function("ceil", (dtype("float64"),), dtype("float64"))
register_function("json", (dtype("?T"),), dtype("str"))
register_function("strip", (dtype("str"),), dtype("str"))
register_function("firstMatchIn", (dtype("str"),dtype("str"),), dtype("array"))
register_function("isEmpty", (dtype("interval"),), dtype("bool"))
register_function("~", (dtype("str"),dtype("str"),), dtype("bool"))
register_function("mkString", (dtype("set"),dtype("str"),), dtype("str"))
register_function("mkString", (dtype("array"),dtype("str"),), dtype("str"))
register_function("dosage", (dtype("array"),), dtype("float64"))
register_function("upper", (dtype("str"),), dtype("str"))
register_function("overlaps", (dtype("interval"),dtype("interval"),), dtype("bool"))
register_function("downcode", (dtype("call"),dtype("int32"),), dtype("call"))
register_function("inXPar", (dtype("?T:locus"),), dtype("bool"))
register_function("format", (dtype("str"),dtype("?T:tuple"),), dtype("str"))
register_function("pnorm", (dtype("float64"),), dtype("float64"))
register_function("is_infinite", (dtype("float32"),), dtype("bool"))
register_function("is_infinite", (dtype("float64"),), dtype("bool"))
register_function("isHetRef", (dtype("call"),), dtype("bool"))hail
Scalable library for exploring and analyzing genomic data.
