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"- Constructs the functional GIC with the "
"points from the given OFF and function files.",
)
parser.add_argument("-o", "--off-file", type=str, required=True)
parser.add_argument("-f", "--function-file", type=str, required=True)
parser.add_argument(
"-v",
"--verbose",
default=False,
action="store_true",
help="Flag for program verbosity",
)
args = parser.parse_args()
nerve_complex = gudhi.CoverComplex()
nerve_complex.set_verbose(args.verbose)
if nerve_complex.read_point_cloud(args.off_file):
nerve_complex.set_type("GIC")
nerve_complex.set_color_from_file(args.function_file)
nerve_complex.set_function_from_file(args.function_file)
nerve_complex.set_graph_from_automatic_rips()
nerve_complex.set_automatic_resolution()
nerve_complex.set_gain()
nerve_complex.set_cover_from_function()
nerve_complex.find_simplices()
nerve_complex.plot_dot()
simplex_tree = nerve_complex.create_simplex_tree()
nerve_complex.compute_PD()
if args.verbose:
print("Iterator on functional GIC simplices")
def __init__(self, graph = -1, graph_subsampling = 100, graph_subsampling_power = 0.001, graph_subsampling_constant = 10,
cover_type = "functional", filter = 0, resolution = -1, gain = 0.33, Voronoi_subsampling = 1000,
mask = 0, color = 0, verbose = False):
if USE_GUDHI == False:
raise ImportError("Error: Gudhi not imported")
self.cc = gd.CoverComplex()
self.cc.set_type("GIC")
self.cc.set_mask(mask)
self.cc.set_verbose(verbose)
self.graph, self.graph_subsampling, self.graph_subsampling_constant, self.graph_subsampling_power = graph, graph_subsampling, graph_subsampling_constant, graph_subsampling_power
self.cover_type, self.filter, self.resolution, self.gain, self.Voronoi_subsampling = cover_type, filter, resolution, gain, Voronoi_subsampling
self.color = color
"- Constructs the coordinate GIC with the "
"points from the given OFF file.",
)
parser.add_argument("-f", "--file", type=str, required=True)
parser.add_argument("-c", "--coordinate", type=int, default=0)
parser.add_argument(
"-v",
"--verbose",
default=False,
action="store_true",
help="Flag for program verbosity",
)
args = parser.parse_args()
nerve_complex = gudhi.CoverComplex()
nerve_complex.set_verbose(args.verbose)
if nerve_complex.read_point_cloud(args.file):
nerve_complex.set_type("GIC")
nerve_complex.set_color_from_coordinate(args.coordinate)
nerve_complex.set_function_from_coordinate(args.coordinate)
nerve_complex.set_graph_from_automatic_rips()
nerve_complex.set_automatic_resolution()
nerve_complex.set_gain()
nerve_complex.set_cover_from_function()
nerve_complex.find_simplices()
nerve_complex.plot_dot()
simplex_tree = nerve_complex.create_simplex_tree()
nerve_complex.compute_PD()
if args.verbose:
print("Iterator on coordinate GIC simplices")
)
parser.add_argument("-f", "--file", type=str, required=True)
parser.add_argument("-c", "--coordinate", type=int, default=0)
parser.add_argument("-r", "--resolution", type=int, default=10)
parser.add_argument("-g", "--gain", type=float, default=0.3)
parser.add_argument(
"-v",
"--verbose",
default=False,
action="store_true",
help="Flag for program verbosity",
)
args = parser.parse_args()
nerve_complex = gudhi.CoverComplex()
nerve_complex.set_verbose(args.verbose)
if nerve_complex.read_point_cloud(args.file):
nerve_complex.set_type("Nerve")
nerve_complex.set_color_from_coordinate(args.coordinate)
nerve_complex.set_function_from_coordinate(args.coordinate)
nerve_complex.set_graph_from_OFF()
nerve_complex.set_resolution_with_interval_number(args.resolution)
nerve_complex.set_gain(args.gain)
nerve_complex.set_cover_from_function()
nerve_complex.find_simplices()
nerve_complex.write_info()
simplex_tree = nerve_complex.create_simplex_tree()
nerve_complex.compute_PD()
if args.verbose:
print("Iterator on graph induced complex simplices")
"- Constructs the Voronoi GIC with the "
"points from the given OFF file.",
)
parser.add_argument("-f", "--file", type=str, required=True)
parser.add_argument("-n", "--subsample-nb-points", type=int, default=100)
parser.add_argument(
"-v",
"--verbose",
default=False,
action="store_true",
help="Flag for program verbosity",
)
args = parser.parse_args()
nerve_complex = gudhi.CoverComplex()
nerve_complex.set_verbose(args.verbose)
if nerve_complex.read_point_cloud(args.file):
nerve_complex.set_type("GIC")
nerve_complex.set_color_from_coordinate()
nerve_complex.set_graph_from_OFF()
nerve_complex.set_cover_from_Voronoi(args.subsample_nb_points)
nerve_complex.find_simplices()
nerve_complex.plot_off()
simplex_tree = nerve_complex.create_simplex_tree()
nerve_complex.compute_PD()
if args.verbose:
print("Iterator on graph induced complex simplices")
result_str = (
"Graph induced complex is of dimension "
+ repr(simplex_tree.dimension())