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  1. Advisor
  2. gtdbtk
  3. functions
View all gtdbtk analysis

Most popular functions for gtdbtk

To help you get started, we’ve selected a few gtdbtk examples, based on popular ways it is used in public projects.

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  • 1

    gtdbtk.biolib_lite.common.check_dir_exists

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  • 2

    gtdbtk.biolib_lite.common.check_file_exists

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  • 3

    gtdbtk.biolib_lite.common.make_sure_path_exists

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  • 4

    gtdbtk.biolib_lite.logger.colour

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  • 5

    gtdbtk.biolib_lite.logger.logger_setup

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  • 6

    gtdbtk.biolib_lite.newick.parse_label

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  • 7

    gtdbtk.biolib_lite.seq_io.read_fasta

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  • 8

    gtdbtk.biolib_lite.seq_io.read_seq

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  • 9

    gtdbtk.biolib_lite.taxonomy.Taxonomy

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  • 10

    gtdbtk.biolib_lite.taxonomy.Taxonomy.rank_labels

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  • 11

    gtdbtk.biolib_lite.taxonomy.Taxonomy.rank_prefixes

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  • 12

    gtdbtk.config.config

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  • 13

    gtdbtk.config.config.TAXONOMY_FILE

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  • 14

    gtdbtk.exceptions.GTDBTkException

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  • 15

    gtdbtk.exceptions.GTDBTkException.__init__

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  • 16

    gtdbtk.exceptions.GTDBTkExit

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  • 17

    gtdbtk.io.marker.tophit.TopHitPfamFile

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  • 18

    gtdbtk.io.marker.tophit.TopHitTigrFile

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  • 19

    gtdbtk.tools.add_ncbi_prefix

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  • 20

    gtdbtk.tools.symlink_f

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