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How to use the gseapy.gsea.ssgsea function in gseapy

To help you get started, we’ve selected a few gseapy examples, based on popular ways it is used in public projects.

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github zqfang / GSEApy / tests / test_commands.py View on Github external
def test_ssgsea1(ssGCT, geneGMT):
    # Only tests of the command runs successfully,
    # doesnt't check the image
    tmpdir= TemporaryDirectory(dir="tests")
    ssgsea(ssGCT, geneGMT, tmpdir.name, permutation_num=100)
    tmpdir.cleanup()
github zqfang / GSEApy / tests / test_commands.py View on Github external
def test_ssgsea2(ssGCT, geneGMT):
    # Only tests of the command runs successfully,
    # doesnt't check the image
    tmpdir= TemporaryDirectory(dir="tests")
    ssgsea(ssGCT, geneGMT, tmpdir.name, permutation_num=0)
    tmpdir.cleanup()
    ssgsea(ssGCT, geneGMT, None, permutation_num=0)
github zqfang / GSEApy / tests / test_commands.py View on Github external
def test_ssgsea2(ssGCT, geneGMT):
    # Only tests of the command runs successfully,
    # doesnt't check the image
    tmpdir= TemporaryDirectory(dir="tests")
    ssgsea(ssGCT, geneGMT, tmpdir.name, permutation_num=0)
    tmpdir.cleanup()
    ssgsea(ssGCT, geneGMT, None, permutation_num=0)

gseapy

Gene Set Enrichment Analysis in Python

GitHub
BSD-3-Clause
Latest version published 6 months ago

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65 / 100
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