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of Machine Learning Research vol. 15, pp. 1625-1651, 2014.
"""
if inbag is None:
inbag = calc_inbag_modified(X_train.shape[0], forest, is_ensemble)
if not is_ensemble:
pred = np.array([tree.predict(X_test) for tree in forest]).T
else:
pred = np.array([tree.predict(X_test) for tree in forest.model]).T
pred = pred[0]
pred_mean = np.mean(pred, 0)
pred_centered = pred - pred_mean
n_trees = forest.n_estimators
V_IJ = fci._core_computation(X_train, X_test, inbag, pred_centered, n_trees,
memory_constrained, memory_limit)
V_IJ_unbiased = fci._bias_correction(V_IJ, inbag, pred_centered, n_trees)
# Correct for cases where resampling is done without replacement:
if np.max(inbag) == 1:
variance_inflation = 1 / (1 - np.mean(inbag)) ** 2
V_IJ_unbiased *= variance_inflation
if basic_IJ:
return V_IJ
if not calibrate:
return V_IJ_unbiased
if V_IJ_unbiased.shape[0] <= 20:
print("No calibration with n_samples <= 20")
return V_IJ_unbiased
if calibrate: