dicompyler-core

v0.5.6

A library of core radiation therapy modules for DICOM / DICOM RT used by dicompyler For more information about how to use this package see README

Latest version published 2 years ago

License: BSD-2-Clause

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Package Health Score

48 / 100

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Security review needed
popularity
Limited
maintenance
Inactive
community
Active

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Popularity

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GitHub Stars: 148
Forks: 69
Contributors: 20

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Based on project statistics from the GitHub repository for the PyPI package dicompyler-core, we found that it has been starred 148 times.

Security

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Release Date: May 8, 2023
Direct Vulnerabilities: 0
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Indirect Vulnerabilities: 0
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License Risk: 0
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License

BSD-2-Clause

Security Policy

Yes

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Maintenance

Inactive

Commit Frequency

No Recent Commits

Open Issues: 19
Open PR: 8
Last Release: 2 years ago
Last Commit: 10 months ago

Further analysis of the maintenance status of dicompyler-core based on released PyPI versions cadence, the repository activity, and other data points determined that its maintenance is Inactive.

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As a healthy sign for on-going project maintenance, we found that the GitHub repository had at least 1 pull request or issue interacted with by the community.

Community

Active

Readme: Yes
Contributing.md: Yes
Code of Conduct: No
Contributors: 20
Funding: Yes

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Package

Python Versions Compatibility: ==3.10.*, ==3.7.*, ==3.8.*, ==3.9.*

Age: 9 years
Latest Release: 2 years ago
Dependencies: 4 Direct / 12 Total
Versions: 6
Maintainers: 1
Wheels: OS Independent

Readme

dicompyler-core

A library of core radiation therapy modules for DICOM / DICOM RT used by dicompyler. This package includes:

dicomparser: parse DICOM objects in an easy-to-use manner
dvh: Pythonic access to dose volume histogram (DVH) data
dvhcalc: Independent DVH calculation using DICOM RT Dose & RT Structure Set
dose: Pythonic access to RT Dose data including dose summation

Other information

Free software: BSD license
Documentation: Read the docs
Tested on Python 3.7+

Dependencies

numpy 1.2 or higher
pydicom 0.9.9 or higher (pydicom 1.0 compatible)
matplotlib 1.3.0 or higher (for DVH calculation)
six 1.5 or higher
Optional:
- Pillow (for image display)
- Shapely (for structure volume calculation)
- scikit-image (for DVH interpolation)
- scipy (for dose grid summation using interpolation)

Basic Usage

from dicompylercore import dicomparser, dvh, dvhcalc
dp = dicomparser.DicomParser("rtss.dcm")

# i.e. Get a dict of structure information
structures = dp.GetStructures()

>>> structures[5]
{'color': array([255, 128, 0]), 'type': 'ORGAN', 'id': 5, 'empty': False, 'name': 'Heart'}

# Access DVH data
rtdose = dicomparser.DicomParser("rtdose.dcm")
heartdvh = dvh.DVH.from_dicom_dvh(rtdose.ds, 5)

>>> heartdvh.describe()
Structure: Heart
DVH Type:  cumulative, abs dose: Gy, abs volume: cm3
Volume:    437.46 cm3
Max Dose:  3.10 Gy
Min Dose:  0.02 Gy
Mean Dose: 0.64 Gy
D100:      0.00 Gy
D98:       0.03 Gy
D95:       0.03 Gy
D2cc:      2.93 Gy

# Calculate a DVH from DICOM RT data
calcdvh = dvhcalc.get_dvh("rtss.dcm", "rtdose.dcm", 5)

>>> calcdvh.max, calcdvh.min, calcdvh.D2cc
(3.0899999999999999, 0.029999999999999999, dvh.DVHValue(2.96, 'Gy'))

Advanced Usage and Examples can be found in Binder:

Citing dicompyler-core

A DOI for dicompyler-core with various citation styles can be found at Zenodo:

Credits

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.

dicompyler-core dependencies

matplotlib numpy pydicom six

FAQs

What is dicompyler-core?

A library of core radiation therapy modules for DICOM / DICOM RT used by dicompyler. Visit Snyk Advisor to see a full health score report for dicompyler-core, including popularity, security, maintenance & community analysis.

Is dicompyler-core popular?

The python package dicompyler-core receives a total of 448 weekly downloads. As such, dicompyler-core popularity was classified as limited. Visit the popularity section on Snyk Advisor to see the full health analysis.

Is dicompyler-core well maintained?

We found indications that dicompyler-core is an Inactive project. See the full package health analysis to learn more about the package maintenance status.

Is dicompyler-core safe to use?

While scanning the latest version of dicompyler-core, we found that a security review is needed. A total of 0 vulnerabilities or license issues were detected. See the full security scan results.

Last updated on 17 November-2024, at 17:24 (UTC).

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Readme

dicompyler-core

Other information

Dependencies

Basic Usage

Citing dicompyler-core

Credits

dicompyler-core dependencies

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