dicompyler-core

v0.5.6

A library of core radiation therapy modules for DICOM / DICOM RT used by dicompyler For more information about how to use this package see README

Latest version published 2 years ago

License: BSD-2-Clause

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48 / 100

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Security review needed
popularity
Limited
maintenance
Inactive
community
Active

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Popularity

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GitHub Stars: 150
Forks: 68
Contributors: 20

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Security

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Release Date: May 8, 2023
Direct Vulnerabilities: 0
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Indirect Vulnerabilities: 0
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License Risk: 0
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License

BSD-2-Clause

Security Policy

Yes

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Maintenance

Inactive

Commit Frequency

No Recent Commits

Open Issues: 19
Open PR: 8
Last Release: 2 years ago
Last Commit: 11 months ago

Further analysis of the maintenance status of dicompyler-core based on released PyPI versions cadence, the repository activity, and other data points determined that its maintenance is Inactive.

An important project maintenance signal to consider for dicompyler-core is that it hasn't seen any new versions released to PyPI in the past 12 months, and could be considered as a discontinued project, or that which receives low attention from its maintainers.

In the past month we didn't find any pull request activity or change in issues status has been detected for the GitHub repository.

Community

Active

Readme: Yes
Contributing.md: Yes
Code of Conduct: No
Contributors: 20
Funding: Yes

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Package

Python Versions Compatibility: ==3.10.*, ==3.7.*, ==3.8.*, ==3.9.*

Age: 9 years
Latest Release: 2 years ago
Dependencies: 4 Direct / 12 Total
Versions: 6
Maintainers: 0
Wheels: OS Independent

Readme

dicompyler-core

A library of core radiation therapy modules for DICOM / DICOM RT used by dicompyler. This package includes:

dicomparser: parse DICOM objects in an easy-to-use manner
dvh: Pythonic access to dose volume histogram (DVH) data
dvhcalc: Independent DVH calculation using DICOM RT Dose & RT Structure Set
dose: Pythonic access to RT Dose data including dose summation

Other information

Free software: BSD license
Documentation: Read the docs
Tested on Python 3.7+

Dependencies

numpy 1.2 or higher
pydicom 0.9.9 or higher (pydicom 1.0 compatible)
matplotlib 1.3.0 or higher (for DVH calculation)
six 1.5 or higher
Optional:
- Pillow (for image display)
- Shapely (for structure volume calculation)
- scikit-image (for DVH interpolation)
- scipy (for dose grid summation using interpolation)

Basic Usage

from dicompylercore import dicomparser, dvh, dvhcalc
dp = dicomparser.DicomParser("rtss.dcm")

# i.e. Get a dict of structure information
structures = dp.GetStructures()

>>> structures[5]
{'color': array([255, 128, 0]), 'type': 'ORGAN', 'id': 5, 'empty': False, 'name': 'Heart'}

# Access DVH data
rtdose = dicomparser.DicomParser("rtdose.dcm")
heartdvh = dvh.DVH.from_dicom_dvh(rtdose.ds, 5)

>>> heartdvh.describe()
Structure: Heart
DVH Type:  cumulative, abs dose: Gy, abs volume: cm3
Volume:    437.46 cm3
Max Dose:  3.10 Gy
Min Dose:  0.02 Gy
Mean Dose: 0.64 Gy
D100:      0.00 Gy
D98:       0.03 Gy
D95:       0.03 Gy
D2cc:      2.93 Gy

# Calculate a DVH from DICOM RT data
calcdvh = dvhcalc.get_dvh("rtss.dcm", "rtdose.dcm", 5)

>>> calcdvh.max, calcdvh.min, calcdvh.D2cc
(3.0899999999999999, 0.029999999999999999, dvh.DVHValue(2.96, 'Gy'))

Advanced Usage and Examples can be found in Binder:

Citing dicompyler-core

A DOI for dicompyler-core with various citation styles can be found at Zenodo:

Credits

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.

dicompyler-core dependencies

matplotlib numpy pydicom six

FAQs

What is dicompyler-core?

A library of core radiation therapy modules for DICOM / DICOM RT used by dicompyler. Visit Snyk Advisor to see a full health score report for dicompyler-core, including popularity, security, maintenance & community analysis.

Is dicompyler-core popular?

The python package dicompyler-core receives a total of 448 weekly downloads. As such, dicompyler-core popularity was classified as limited. Visit the popularity section on Snyk Advisor to see the full health analysis.

Is dicompyler-core well maintained?

We found indications that dicompyler-core is an Inactive project. See the full package health analysis to learn more about the package maintenance status.

Is dicompyler-core safe to use?

While scanning the latest version of dicompyler-core, we found that a security review is needed. A total of 0 vulnerabilities or license issues were detected. See the full security scan results.

Last updated on 22 December-2024, at 17:25 (UTC).

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Readme

dicompyler-core

Other information

Dependencies

Basic Usage

Citing dicompyler-core

Credits

dicompyler-core dependencies

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