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How to use the comparem.lgt_codon.LgtCodon function in comparem

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dparks1134 / CompareM / comparem / main.py View on Github

def lgt_codon(self, options):
        """LGT dinucleotide usage command"""

        gene_files = self._input_files(options.nucleotide_gene_files, options.file_ext)

        lgt_codon = LgtCodon(options.cpus)
        lgt_codon.run(gene_files, options.output_dir)

        self.logger.info('Codon usage written to directory: %s' % options.output_dir)