python PyPI
Magnify icon
  • All Packages
    • JavaScript
    • Python
    • Go
  • Code Examples
    • JavaScript
    • Python
  • Categories
    • JavaScript - Popular
    • JavaScript - Healthiest
    • Python - Popular
    • Python - Healthiest
  • Developer Tools
    • Vulnerability DB
    • Code Checker
    • Snyk Learn
    • Blog
Sign Up
  1. Advisor
  2. cogent3
  3. functions
View all cogent3 analysis

Most popular functions for cogent3

To help you get started, we’ve selected a few cogent3 examples, based on popular ways it is used in public projects.

Secure your code as it's written. Use Snyk Code to scan source code in minutes - no build needed - and fix issues immediately.

  • 1

    cogent3.app.evo.model

    arrow
  • 2

    cogent3.core.alignment.ArrayAlignment

    arrow
  • 3

    cogent3.core.location.Span

    arrow
  • 4

    cogent3.core.tree.TreeNode

    arrow
  • 5

    cogent3.DNA

    arrow
  • 6

    cogent3.DNA.make_seq

    arrow
  • 7

    cogent3.draw.linear.Box

    arrow
  • 8

    cogent3.evolve.models.get_model

    arrow
  • 9

    cogent3.evolve.substitution_model.TimeReversibleNucleotide

    arrow
  • 10

    cogent3.load_aligned_seqs

    arrow
  • 11

    cogent3.make_aligned_seqs

    arrow
  • 12

    cogent3.make_tree

    arrow
  • 13

    cogent3.maths.stats.number.CategoryCounter

    arrow
  • 14

    cogent3.parse.tree.DndParser

    arrow
  • 15

    cogent3.util.dict2d.Dict2D

    arrow
  • 16

    cogent3.util.dict_array.DictArrayTemplate

    arrow
  • 17

    cogent3.util.misc.get_object_provenance

    arrow
  • 18

    cogent3.util.table.Table

    arrow
  • 19

    cogent3.util.union_dict.UnionDict

    arrow
  • 20

    cogent3.util.unit_test.TestCase

    arrow

Product

  • Partners
  • Developers & DevOps Features
  • Enterprise Features
  • Pricing
  • API Status

Resources

  • Vulnerability DB
  • Blog
  • Learn
  • Documentation
  • Snyk API
  • Research
  • FAQs
  • npm packages list
  • Python Code Examples
  • Browse all Python packages

Company

  • About us
  • Customers
  • Jobs at Snyk
  • Legal Terms
  • Privacy
  • Press Kit
  • Events
  • Secure by Design

Connect

  • Book a demo
  • Contact us
  • Support
  • Report a new vuln

Security

  • JavaScript Security
  • Kubernetes Security
  • Container Security
  • Open Source Security
  • Secure SDLC

Find us online

Track our development

Snyk|Open Source Security Platform © 2025 Snyk Ltd.