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def __init__(self, infile, outfile):
AbstractPlot.__init__(self, None)
self.outfile = outfile
self.genomes = None
self._parse_data(infile)
self.colormap = pylab.cm.bwr
self.discreteColourMap = ListedColormap([(141/255.0, 211/255.0, 199/255.0),(255/255.0, 255/255.0, 179/255.0),
(190/255.0, 186/255.0, 218/255.0),(251/255.0, 128/255.0, 114/255.0),
(128/255.0, 177/255.0, 211/255.0),(253/255.0, 180/255.0, 98/255.0),
(179/255.0, 222/255.0, 105/255.0),(252/255.0, 205/255.0, 229/255.0),
(217/255.0, 217/255.0, 217/255.0), (188/255.0, 128/255.0, 189/255.0),
(204/255.0, 235/255.0, 197/255.0),(255/255.0, 237/255.0, 111/255.0)])
def __init__(self, options):
"""Initialize."""
AbstractPlot.__init__(self, options)
def __init__(self, options):
"""Initialize plot."""
AbstractPlot.__init__(self, options)
def __init__(self, options):
"""Initialize."""
AbstractPlot.__init__(self, options)