Package Health Score

48 / 100

security
Security review needed
popularity
Limited
maintenance
Inactive
community
Limited

Popularity

Limited

GitHub Stars: 9
Forks: 3
Contributors: 2

Direct Usage Popularity

Based on project statistics from the GitHub repository for the PyPI package af2-analysis, we found that it has been starred 9 times.

Security

Security review needed

Security and license risk for latest version

Release Date: Nov 20, 2023
Direct Vulnerabilities: 0
C
0
H
0
M
0
L
Indirect Vulnerabilities: 0
C
0
H
0
M
0
L
License Risk: 2
H
0
M
0
L

All security vulnerabilities belong to production dependencies of direct and indirect packages.

License

GPL-2.0

Non-Permissive License

We noticed that this project uses a license which requires less permissive conditions such as disclosing the source code, stating changes or redistributing the source under the same license. It is advised to further consult the license terms before use.

Security Policy

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Maintenance

Inactive

Commit Frequency

Open Issues: 1
Open PR: 0
Last Release: 12 months ago
Last Commit: 28 days ago

Further analysis of the maintenance status of af2-analysis based on released PyPI versions cadence, the repository activity, and other data points determined that its maintenance is Inactive.

We found that af2-analysis demonstrates a positive version release cadence with at least one new version released in the past 12 months.

In the past month we didn't find any pull request activity or change in issues status has been detected for the GitHub repository.

Community

Limited

Readme: Yes
Contributing.md: No
Code of Conduct: No
Contributors: 2
Funding: No

This project has seen only 10 or less contributors.

We found a way for you to contribute to the project! Looks like af2-analysis is missing a Code of Conduct.

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Package

Python Versions Compatibility: >=3.7

Age: 12 months
Latest Release: 12 months ago
Dependencies: 5 Direct / 18 Total
Versions: 1
Maintainers: 1
Wheels: OS Independent

Readme

Alphafold2 Analysis

af2_analysis is a python package allowing a simplified analysis of alphafold and colabfold results.

Installation

git clone https://github.com/samuelmurail/af2_analysis
cd af2_analysis
python setup.py install

Usage

Create the Data object, giving the path of the directory containing the results of the alphafold2/colabfold run.

import af2_analysis
my_data = af2_analysis.Data('MY_AF2_RESULTS_DIR')

Extracted data are available in the df attribute of the Data object.

my_data.df

Compute pdockQ and pdockQ2:

my_data.compute_pdockq()
my_data.compute_pdockq2()

plot msa

my_data.plot_msa()

plot plddt:

my_data.plot_plddt([0,1])

plot PAE:

my_data.plot_pae(my_data.df['ranking_confidence'].idxmax())

show 3D structure (nglview required):

my_data.show_3d(my_data.df['ranking_confidence'].idxmax())

af2-analysis dependencies

cmcrameri pandas pdb-numpy seaborn tqdm

FAQs

What is af2-analysis?

`AF2 analysis` is a python library allowing analysis of Alphafold results. Visit Snyk Advisor to see a full health score report for af2-analysis, including popularity, security, maintenance & community analysis.

Is af2-analysis popular?

The python package af2-analysis receives a total of 16 weekly downloads. As such, af2-analysis popularity was classified as limited. Visit the popularity section on Snyk Advisor to see the full health analysis.

Is af2-analysis well maintained?

We found indications that af2-analysis is an Inactive project. See the full package health analysis to learn more about the package maintenance status.

Is af2-analysis safe to use?

While scanning the latest version of af2-analysis, we found that a security review is needed. A total of 0 vulnerabilities or license issues were detected. See the full security scan results.

Last updated on 14 October-2024, at 21:06 (UTC).

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af2-analysis

`AF2 analysis` is a python library allowing analysis of Alphafold results. For more information about how to use this package see README

Ensure you're using the healthiest python packages

Package Health Score

Popularity

Direct Usage Popularity

Security

Security and license risk for latest version

Non-Permissive License

Maintenance

Commit Frequency

Community

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Package

Readme

Alphafold2 Analysis

Installation

Usage

af2-analysis dependencies

FAQs

What is af2-analysis?

Is af2-analysis popular?

Is af2-analysis well maintained?

Is af2-analysis safe to use?

Build a secure application checklist

Select a recommended open source package

Scan your app for vulnerabilities

Fix identified vulnerabilities

Monitor for new issues

Package Health Score

Direct Usage Popularity

Security and license risk for latest version

Commit Frequency

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Check your requirements.txt

Snyk Vulnerability Scanner

Readme

Alphafold2 Analysis

Installation

Usage

af2-analysis dependencies

FAQs

What is af2-analysis?

Is af2-analysis popular?

Is af2-analysis well maintained?

Is af2-analysis safe to use?

Build a secure application checklist

Select a recommended open source package

Scan your app for vulnerabilities

Source Code

Open Source

Container

Config

Fix identified vulnerabilities

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