How to use the mdanalysis.AccumulationMapIndex.index function in MDAnalysis

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maxscheurer / pycontact / mdanalysis.py View on Github

def makeKeyArraysFromMaps(self,map1, map2, contact):
        idx1 = contact.idx1
        idx2 = contact.idx2
        counter = 0
        keys1 = []
        for val in map1:
            if val == 1:
                if counter == AccumulationMapIndex.index:
                    keys1.append(idx1)
                elif counter == AccumulationMapIndex.atype:
                    keys1.append(self.type_array[idx1])
                elif counter == AccumulationMapIndex.name:
                    keys1.append(self.name_array[idx1])
                elif counter == AccumulationMapIndex.resid:
                    keys1.append(self.resid_array[idx1])
                elif counter == AccumulationMapIndex.resname:
                    keys1.append(self.resname_array[idx1])
                elif counter == AccumulationMapIndex.segid:
                    keys1.append(self.segids[idx1])
            else:
                keys1.append("none")
            counter += 1
        counter = 0
        keys2 = []

How to use the mdanalysis.AccumulationMapIndex.index function in MDAnalysis

To help you get started, we’ve selected a few MDAnalysis examples, based on popular ways it is used in public projects.

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